
Acarbose
Description
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Properties
CAS No. |
56810-94-0 |
---|---|
Molecular Formula |
C25H43NO18 |
Molecular Weight |
645.6 |
Origin of Product |
United States |
Acarbose: Foundational Academic Context and Research Significance
Historical Trajectory of Discovery and Early Biochemical Characterization
Acarbose is a complex oligosaccharide that functions as an alpha-glucosidase inhibitor. Its origins trace back to microbial fermentation processes, specifically from cultures of the soil bacterium Actinoplanes utahensis drugs.comresearchgate.net. The discovery of this compound provided a novel approach to managing hyperglycemia by targeting carbohydrate digestion mdpi.com. Early biochemical characterization revealed its structure as a pseudotetrasaccharide, composed of an acarviosine moiety linked to maltose rcsb.orgwikipedia.org. Unlike typical saccharides, this compound contains a nitrogen linkage between the cyclitol (non-reducing end) and the deoxyhexose, which renders it resistant to cleavage by certain digestive enzymes researchgate.net. This unique structural feature contributes to its mechanism of action as an enzyme inhibitor researchgate.netrcsb.org. Further studies identified that this compound competitively and reversibly inhibits key enzymes involved in carbohydrate hydrolysis in the intestinal brush border drugs.comdrugbank.com.
The biosynthesis of this compound in Actinoplanes species has been a subject of extensive research. While the complete pathway was not initially understood, studies utilizing isotope tracers, gene inactivation, and biochemical experiments have progressively elucidated the enzymatic steps involved acs.orgnih.gov. It has been shown that the biosynthetic pathway starts from sedoheptulose 7-phosphate, an intermediate of the pentose phosphate pathway, and involves the incorporation of glutamate as the primary source of nitrogen frontiersin.org. Research has characterized various enzymes crucial for the formation and assembly of this compound's structural components, including kinases, phosphatases, nucleotidyltransferases, glycosyltransferases, and pseudoglycosyltransferases nih.gov.
This compound as a Prototypical Alpha-Glucosidase Inhibitor in Research
This compound is widely recognized as a prototypical compound within the class of alpha-glucosidase inhibitors and has been extensively studied in research wikipedia.orgnih.gov. Its well-characterized mechanism of competitive and reversible inhibition of intestinal alpha-glucosidases and pancreatic alpha-amylase has made it a benchmark for evaluating the activity of novel compounds with potential alpha-glucosidase inhibitory effects drugs.comdrugbank.comtandfonline.com.
Research studies investigating new potential alpha-glucosidase inhibitors often use this compound as a positive control for comparison of inhibitory potency (IC50 values) mdpi.comtandfonline.comresearchgate.net. For example, studies evaluating the alpha-glucosidase inhibitory activity of natural compounds or synthetic derivatives frequently report their efficacy relative to this compound tandfonline.comresearchgate.net. This comparative approach allows researchers to gauge the relative strength of inhibition and potential therapeutic relevance of novel agents tandfonline.comresearchgate.net.
Furthermore, this compound's interaction with alpha-glucosidase enzymes has been investigated at a molecular level. Structural studies, including those utilizing techniques like X-ray crystallography, have provided insights into how this compound binds to the active sites of these enzymes, revealing extensive hydrogen bonding interactions with key amino acid residues rcsb.org. These studies demonstrate that this compound acts by physically blocking the active sites, thereby preventing the binding and hydrolysis of natural oligosaccharide substrates rcsb.org.
Acarbose Biosynthesis and Metabolic Engineering Research
Microbial Producers and Natural Isolation Sources
Acarbose is naturally produced by soil bacteria, notably strains belonging to the genus Actinoplanes. The most well-studied producer is Actinoplanes sp. SE50/110. researchgate.netdntb.gov.uaoregonstate.edufrontiersin.org Other Actinoplanes strains, such as Actinoplanes utahensis and Actinoplanes hulinensis, have also been identified as this compound producers. frontiersin.orgnih.gov Additionally, some Streptomyces species, such as Streptomyces glaucescens GLA.O and Streptomyces coelicoflavus ZG0656, produce acarviostatins, which are structurally related to this compound and share similar biosynthetic pathways. d-nb.infonih.govmdpi.com
This compound was initially extracted from the metabolites of Actinomycetes strains SE50, SE18, and SE82. mdpi.comgoogle.com These microorganisms serve as the natural isolation sources for this valuable compound.
Table 1: Key Microbial Producers of this compound and Related Compounds
Genus | Species/Strain | Compound Produced |
Actinoplanes | sp. SE50/110 | This compound |
Actinoplanes | utahensis | This compound |
Actinoplanes | hulinensis A1094 | This compound |
Streptomyces | glaucescens GLA.O | Acarviostatins |
Streptomyces | coelicoflavus ZG0656 | Acarviostatins |
Streptomyces | sp. SE18 | This compound |
Streptomyces | sp. SE82 | This compound |
Elucidation of Complete Biosynthetic Pathways and Intermediates
Significant progress has been made in elucidating the complete biosynthetic pathway of this compound in Actinoplanes sp. SE50/110. researchgate.netdntb.gov.uanih.govspringernature.com The pathway involves the synthesis and assembly of two main structural components: a C7-cyclitol moiety (valienol) and an amino-deoxyhexose unit, which are then linked to maltose. researchgate.netnih.gov
Precursor Derivations (e.g., Sedoheptulose 7-phosphate, Glucose, Maltose)
The biosynthesis of this compound utilizes several key precursors. Sedoheptulose 7-phosphate (SH7P), an intermediate of the pentose phosphate pathway, is the starting precursor for the C7-cyclitol moiety. nih.govfrontiersin.orgresearchgate.net Glucose and maltose serve as carbon sources and are directly incorporated into the this compound structure. bioline.org.brresearchgate.netnih.gov Maltose is particularly important as it forms part of the final this compound molecule. dntb.gov.uanih.govnih.gov Glucose-1-phosphate, derived from glucose-6-phosphate, is also a precursor in the this compound synthesis pathway. nih.gov
Formation of Key Subunits (e.g., GDP-valienol, Amino-deoxyhexose)
The biosynthesis proceeds through the formation of key subunits. The C7-cyclitol moiety is formed via a series of enzymatic reactions starting from sedoheptulose 7-phosphate, leading to intermediates such as 2-epi-5-epi-valiolone and valienol 7-phosphate. researchgate.netdntb.gov.uanih.govfrontiersin.orgresearchgate.net GDP-valienol is derived from valienol 7-phosphate through the action of cyclitol modifying enzymes. researchgate.netdntb.gov.uanih.govresearchgate.net
The amino-deoxyhexose subunit, specifically O-4-amino-(4,6-dideoxy-α-D-glucopyranosyl)-(1→4)-O-α-D-glucopyranosyl-(1→4)-D-glucopyranose, is produced from dTDP-4-amino-4,6-dideoxy-D-glucose and maltose. researchgate.netdntb.gov.uanih.govresearchgate.net The formation of dTDP-4-amino-4,6-dideoxy-D-glucose involves enzymes like AcbV, which catalyzes a reaction involving glutamate. frontiersin.orgmdpi.com
Pseudoglycosyltransferase-Catalyzed Assembly Mechanisms
The final assembly of the this compound molecule involves the joining of the C7-cyclitol moiety, the amino-deoxyhexose unit, and maltose. This crucial step is catalyzed by pseudoglycosyltransferase enzymes. researchgate.netnih.govmdpi.com Specifically, the enzyme AcbS, a pseudoglycosyltransferase, catalyzes the formation of a non-glycosidic C-N bond that links the C7-cyclitol and the amino-deoxyhexose moieties. researchgate.netdntb.gov.uanih.govnih.gov Another enzyme, AcbI, a glycosyltransferase, is involved in the production of the amino-deoxyhexose-maltose component from dTDP-4-amino-4,6-dideoxy-D-glucose and maltose. researchgate.netdntb.gov.uanih.govresearchgate.net Interestingly, despite their sequence similarity, AcbS and AcbI have distinct catalytic activities. springernature.com
Identification and Characterization of Biosynthetic Gene Clusters (acb)
The genes responsible for this compound biosynthesis are clustered together in the genome of the producing organisms, forming the acb gene cluster. researchgate.netd-nb.infodntb.gov.uatandfonline.comresearchgate.netnih.gov In Actinoplanes sp. SE50/110, the acb gene cluster is approximately 32.2 kb in length and contains 22 genes. acs.org The sequencing and analysis of this gene cluster have been fundamental to understanding the biosynthetic pathway. tandfonline.comnih.gov While the acb cluster in Actinoplanes sp. SE50/110 lacks genes coding for transcriptional regulators, such regulators have been identified in the acarviostatin gene clusters of Streptomyces species. d-nb.info
Research has also focused on identifying essential genes within the acb cluster for this compound production. Studies using genome-scale metabolic models have indicated that specific acb cluster genes are essential for this compound synthesis, and the deletion of any of these genes can prevent production. frontiersin.org
Functional Annotation of Enzymes (e.g., AcbS, AcbI, AcbV)
Functional annotation of the enzymes encoded by the acb gene cluster has provided significant insights into their roles in this compound biosynthesis. Key enzymes and their functions include:
AcbS: A pseudoglycosyltransferase that catalyzes the final assembly step, forming a non-glycosidic C-N bond between the C7-cyclitol and amino-deoxyhexose moieties. researchgate.netd-nb.infonih.govnih.govmdpi.comnih.gov Overexpression of acbS has been shown to increase this compound titer. acs.orgacs.org
AcbI: A glycosyltransferase involved in the formation of the amino-deoxyhexose-maltose subunit from dTDP-4-amino-4,6-dideoxy-D-glucose and maltose. researchgate.netd-nb.infonih.govresearchgate.netmdpi.com Overexpression of acbI has also been explored for yield enhancement. acs.orgacs.org
AcbV: An L-glutamic acid-dependent enzyme involved in the biosynthesis of dTDP-4-amino-4,6-dideoxy-D-glucose, a precursor for the amino-deoxyhexose subunit. d-nb.infofrontiersin.orgmdpi.com AcbV catalyzes the conversion of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose, which is then converted to dTDP-4-amino-4,6-dideoxy-D-glucose. mdpi.com
AcbC: A C7-cyclitol synthase that catalyzes the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone, the first committed step in the C7-cyclitol biosynthesis. dntb.gov.uad-nb.infofrontiersin.orgresearchgate.net
AcbM: An ATP-dependent kinase involved in the phosphorylation of 2-epi-5-epi-valiolone. dntb.gov.uad-nb.inforesearchgate.net
AcbO: An epimerase that acts on phosphorylated intermediates in the C7-cyclitol pathway. dntb.gov.uad-nb.inforesearchgate.net
AcbJ: An enzyme involved in the modification of this compound 7-phosphate. dntb.gov.uafrontiersin.org Overexpression of acbJ has been shown to increase this compound titer. acs.orgacs.org
AcbB: Encodes dTDP-glucose-4,6-dehydratase, involved in the synthesis pathway of the amino-deoxyhexose moiety. nih.govmdpi.com Promoting acbB expression has been suggested as a way to increase yield. nih.gov
AcbD and AcbE: Encode extracellular glycosyltransferases potentially involved in the extracellular metabolism of this compound or the "carbophor" cycle, which may involve the uptake of extracellular saccharides linked to this compound. nih.govd-nb.infofrontiersin.orgnih.govresearchgate.net AcbE is also an this compound-resistant alpha-amylase. nih.gov
AcbQ: A 4-α-glucanotransferase potentially involved in this compound modification and the formation of this compound by-products. frontiersin.orgmdpi.com
Metabolic engineering efforts have targeted these enzymes and their corresponding genes to improve this compound production. Strategies include overexpression of rate-limiting enzymes like AcbJ and AcbS, and manipulating pathways that supply precursors such as glucose-1-phosphate. nih.govacs.orgacs.org
Table 2: Selected Enzymes in this compound Biosynthesis and Their Functions
Enzyme | Proposed Function | Involved in Subunit Synthesis | Corresponding Gene |
AcbS | Pseudoglycosyltransferase catalyzing final C-N bond formation | Final Assembly | acbS |
AcbI | Glycosyltransferase forming amino-deoxyhexose-maltose subunit | Amino-deoxyhexose | acbI |
AcbV | L-glutamic acid-dependent enzyme in dTDP-4-amino-4,6-dideoxy-D-glucose synthesis | Amino-deoxyhexose | acbV |
AcbC | C7-cyclitol synthase | C7-cyclitol | acbC |
AcbM | Kinase phosphorylating C7-cyclitol intermediate | C7-cyclitol | acbM |
AcbO | Epimerase in C7-cyclitol pathway | C7-cyclitol | acbO |
AcbJ | Involved in this compound 7-phosphate modification | Modification | acbJ |
AcbB | dTDP-glucose-4,6-dehydratase in amino-deoxyhexose synthesis | Amino-deoxyhexose | acbB |
AcbD | Extracellular glycosyltransferase, "carbophor" cycle | Extracellular Metabolism | acbD |
AcbE | Extracellular glycosyltransferase, "carbophor" cycle, this compound-resistant α-amylase | Extracellular Metabolism | acbE |
AcbQ | 4-α-glucanotransferase, this compound modification/by-product formation | Modification/By-products | acbQ |
Advanced Metabolic Engineering Strategies for Enhanced Research Production
Metabolic engineering approaches are crucial for overcoming bottlenecks in this compound production and enhancing yields in producing strains like Actinoplanes sp. SE50/110. acs.org These strategies involve rational design based on metabolic models and various genetic manipulation techniques.
Rational Design via Genome-Scale Metabolic Models
Genome-scale metabolic models (GSMMs) provide a comprehensive understanding of an organism's cellular metabolism and serve as a valuable platform for optimizing and applying systems metabolic engineering for this compound production. researchgate.netnih.gov A GSMM of Actinoplanes sp. SE50/110, named iYLW1028, was reconstructed based on genome annotation, biochemical databases, and literature. researchgate.netnih.gov This model encompasses 1028 genes, 1128 metabolites, and 1219 reactions, providing a detailed map of the metabolic network. researchgate.netnih.gov
GSMMs allow for in silico analysis and prediction of metabolic flux distributions and the identification of essential genes for growth and this compound synthesis. nih.gov Based on model predictions, strategies such as the addition of specific amino acids like arginine and histidine to the culture media have been shown to significantly increase this compound production. researchgate.netnih.gov Dissolved oxygen levels have also been identified through model predictions as having a substantial effect on this compound production. researchgate.netnih.gov Furthermore, GSMMs can predict genes whose overexpression could lead to increased this compound production and identify gene deletions that could eliminate byproduct formation, such as the deletion of treY to eliminate component C. researchgate.netnih.gov
The use of GSMMs enables rational strain design by providing data-driven insights into metabolic bottlenecks and potential targets for genetic manipulation, thereby reducing the need for extensive experimental trials. nih.gov
Genetic Manipulation and Pathway Optimization Techniques
Genetic manipulation and pathway optimization techniques are directly applied to engineered Actinoplanes strains to improve this compound yields. These techniques often build upon insights gained from transcriptional regulation studies and metabolic modeling.
Overexpression of genes within the this compound biosynthetic gene cluster (acb) that exhibit low expression levels has been shown to significantly increase this compound yield. researchgate.netnih.govnih.govresearchgate.net For example, overexpression of acbB and acbD has been targeted based on their regulation by TetR1 and their relatively low expression during fermentation. nih.gov Overexpression of rate-limiting genes such as acbJ and acbS has also resulted in increased this compound titers. acs.org
Pathway engineering strategies focus on redirecting metabolic flux towards this compound synthesis. One successful approach involves manipulating the glycogen metabolic pathways to retain more glucose-1-phosphate, a precursor for this compound synthesis, by weakening the glycogen synthesis pathway and strengthening the glycogen degradation pathway. researchgate.netnih.govnih.govdntb.gov.uaresearchgate.net
Multiple engineering strategies are often combined to achieve significant enhancements in this compound production. For instance, a combination of overexpressing a positive transcriptional regulator (TetR1), overexpressing low-expression genes in the acb cluster, and regulating glycogen metabolism pathways, coupled with optimized culture conditions like fed-batch fermentation, has led to substantial increases in this compound yield. researchgate.netnih.govnih.govdntb.gov.ua Such combined strategies have resulted in reported this compound titers reaching 8.04 g/L, representing a significant increase compared to parent strains. researchgate.netnih.govnih.govdntb.gov.ua
Genetic toolkits enabling efficient genetic engineering in Actinoplanes sp., including attachment/integration (Att/Int) systems, have been developed to facilitate the integration of additional copies of the acb cluster into the chromosome. acs.org While increasing the copy number of the acb cluster can enhance production, there can be a point where further increases lead to decreased titers, potentially requiring the overexpression of rate-limiting enzymes to restore high production levels. acs.org
The application of these advanced metabolic engineering strategies, guided by a deeper understanding of transcriptional regulation and metabolic networks, holds significant potential for further improving the industrial production of this compound. acs.org
Molecular Mechanisms of Enzyme Inhibition by Acarbose
Competitive and Reversible Inhibition Kinetics of Alpha-Glucosidases
Acarbose is characterized as a competitive and reversible inhibitor of intestinal alpha-glucosidases. drugbank.combjcardio.co.uknih.gov This means that this compound competes with the natural substrate for binding to the enzyme's active site. The inhibition is reversible because this compound can bind and unbind from the enzyme, and its effect can be overcome by increasing the concentration of the substrate. drugbank.combjcardio.co.uk
Inhibition Profiles Against Intestinal Alpha-Glucosidases (e.g., Sucrase, Maltase, Isomaltase, Glucoamylase)
This compound demonstrates varying degrees of inhibitory potency against different intestinal alpha-glucosidases. Its inhibitory activity generally follows a rank order, with the strongest inhibition observed against glucoamylase, followed by sucrase, maltase, and isomaltase. drugbank.comnih.gov These enzymes are crucial for hydrolyzing disaccharides (like sucrose and maltose), oligosaccharides, and polysaccharides into glucose and other monosaccharides that can be absorbed. wikipedia.orgnih.gov By inhibiting these enzymes, this compound delays the release and absorption of glucose. medsafe.govt.nzwikipedia.org
Research using cell-free extracts from human intestinal cells has shown specific IC50 values for this compound against key alpha-glucosidases. For instance, this compound inhibited sucrase, maltase, and isomaltase with IC50 values of 1.65 µM, 13.9 µM, and 39.1 µM, respectively. mdpi.com This data highlights the differential sensitivity of these enzymes to this compound inhibition.
Intestinal Alpha-Glucosidase | IC50 (µM) |
Sucrase | 1.65 |
Maltase | 13.9 |
Isomaltase | 39.1 |
Table 1: IC50 values of this compound against human intestinal alpha-glucosidases. mdpi.com
Interaction with Pancreatic Alpha-Amylase
Studies have reported IC50 values for this compound against pancreatic alpha-amylase, although these values can vary depending on the source of the enzyme and assay conditions. For example, one study using porcine pancreatic alpha-amylase reported an IC50 of 52.2 µg/mL researchgate.net, while another using pancreatic alpha-amylase reported an IC50 of 18.1 ± 0.1 μM mdpi.com.
Enzyme | IC50 (µM) |
Pancreatic Alpha-Amylase | 18.1 ± 0.1 mdpi.com |
Pancreatic Alpha-Amylase | ~80.8 (52.2 µg/mL) researchgate.net |
Table 2: Reported IC50 values of this compound against pancreatic alpha-amylase.
Enzyme Kinetic Parameters and Their Derivation (e.g., Km, Vmax, Ki)
Enzyme kinetics provide valuable insights into the mechanism of enzyme inhibition. Key parameters include the Michaelis constant (Km), maximum reaction velocity (Vmax), and the inhibitor dissociation constant (Ki). scispace.com Km represents the substrate concentration at which the reaction rate is half of Vmax, reflecting the enzyme's affinity for the substrate. Vmax is the maximum rate of the reaction when the enzyme is saturated with substrate. Ki is a measure of the inhibitor's potency, representing the dissociation constant of the enzyme-inhibitor complex. nih.gov A lower Ki value indicates a stronger binding affinity of the inhibitor for the enzyme.
Lineweaver-Burk Analysis and Inhibition Type Determination
The Lineweaver-Burk plot, a double-reciprocal plot of enzyme kinetic data (1/V versus 1/[S]), is a common method used to determine the type of enzyme inhibition and derive kinetic parameters. rsc.orgmdpi.com For a competitive inhibitor like this compound acting on alpha-glucosidase, the Lineweaver-Burk plots at different inhibitor concentrations show a family of lines that intersect on the y-axis. nih.govrsc.org This pattern indicates that Vmax remains unchanged, but the apparent Km increases with increasing inhibitor concentration, consistent with the inhibitor competing with the substrate for the same active site. nih.govrsc.org
Studies analyzing the inhibition kinetics of this compound on alpha-glucosidase using Lineweaver-Burk plots have confirmed its competitive inhibition pattern. rsc.orgresearchgate.net The plots show that as this compound concentration increases, the slope of the lines increases, while the y-intercept (representing 1/Vmax) remains constant. nih.govrsc.org
While this compound primarily exhibits competitive inhibition against alpha-glucosidases, its interaction with pancreatic alpha-amylase can show different kinetic profiles, with some studies suggesting non-competitive or mixed-type inhibition depending on the experimental conditions and enzyme source. nih.govmdpi.commdpi.com
Time-Dependent Inhibition Studies
While competitive inhibition is typically considered rapid and reversible upon removal of the inhibitor, some interactions can exhibit time-dependent characteristics, particularly if the inhibitor's binding leads to slower conformational changes in the enzyme or if the inhibitor is metabolized at the active site. Research on the time-dependent inhibition of alpha-glucosidases by this compound has explored the dynamics of its binding and dissociation. The reversible nature of this compound inhibition implies that its effects are primarily dependent on its concentration at the site of action rather than irreversible enzyme modification.
Substrate Mimicry and Transition State Analog Characteristics
This compound's inhibitory potency stems from its structural resemblance to the natural substrates of alpha-glucosidases and alpha-amylase, particularly the transition state of the enzymatic reaction. wikipedia.orgrcsb.org this compound is described chemically as a pseudotetrasaccharide, mimicking a maltotetraose structure. wikipedia.org Its acarviosine moiety, which contains an amine linkage and a cyclohexene ring, is thought to mimic the transition state oxocarbenium ion intermediate that forms during the hydrolysis of glycosidic bonds by these enzymes. wikipedia.org
By mimicking the transition state, this compound binds to the enzyme's active site with high affinity, effectively "locking up" the enzyme and preventing the binding and hydrolysis of the natural substrate. wikipedia.org This transition state mimicry contributes significantly to this compound's potent inhibitory activity against alpha-glucosidases. rcsb.orgnih.govacs.org Structural studies, such as the crystal structure of alpha-glucosidase bound with this compound, have provided visual evidence of how this compound interacts with the enzyme's active site, occupying the substrate-binding pocket and mimicking the transition state conformation. rcsb.orgacs.org
Computational and Structural Biology Investigations of Acarbose-enzyme Interactions
Molecular Docking Studies of Acarbose with Alpha-Glucosidases
Molecular docking is a computational technique used to predict the preferred orientation (binding mode) of a ligand when bound to a protein target and to estimate the strength of the interaction (binding affinity). In studies investigating potential alpha-glucosidase inhibitors, this compound is frequently used as a reference compound or positive control due to its established inhibitory activity. mdpi.comnih.govmdpi.comherbmedpharmacol.comresearchgate.netwindows.netresearchgate.netresearchgate.netrsc.org Docking simulations predict how this compound fits into the active site of alpha-glucosidase enzymes.
Identification of Key Amino Acid Residues in Binding Pockets
Molecular docking studies have identified several key amino acid residues within the binding pocket of alpha-glucosidases that are crucial for the interaction with this compound. These residues are typically located in or near the enzyme's active site. mdpi.comherbmedpharmacol.comresearchgate.netresearchgate.netresearchgate.netrsc.orgresearchgate.netresearchgate.netnih.govresearchgate.netmdpi.comnih.gov Specific residues reported to interact with this compound include Asp, Glu, Arg, Tyr, Trp, Phe, Leu, Asn, His, Met, Ser, and Gln. mdpi.comnih.govresearchgate.netrsc.orgresearchgate.netresearchgate.netnih.govscielo.brmdpi.comnih.govscirp.org For instance, residues like Trp481, Asp518, Leu677, Leu678, and Leu680 have been observed to contribute significantly to binding energies in some studies. mdpi.com In sugar beet alpha-glucosidase, Phe-236 and Asn-237 in the N-loop, along with Ser-497 in subdomain b2, are important for substrate recognition and interact with this compound. nih.gov Other studies highlight residues such as TYR158, GLN353, and GLU411 as forming key hydrogen bonds with this compound. researchgate.net ASP215, GLU277, HIS351, ASP352, and ARG442 have also been identified as crucial interacting residues. nih.gov
Analysis of Hydrogen Bonding and Hydrophobic Interactions
The binding of this compound to alpha-glucosidases is mediated by a combination of non-covalent interactions, primarily hydrogen bonds and hydrophobic interactions. mdpi.comnih.govresearchgate.netresearchgate.netmdpi.comscielo.brmdpi.comnih.govcellmolbiol.orgscielo.brfrontiersin.orgbohrium.com Hydrogen bonds form between the hydroxyl groups and nitrogen atom of this compound and polar amino acid residues in the binding pocket. nih.govfrontiersin.org Hydrophobic interactions occur between non-polar parts of this compound and hydrophobic residues in the active site. mdpi.commdpi.comscielo.brcellmolbiol.orgscielo.br Both types of interactions are essential for stabilizing the this compound-enzyme complex and contributing to binding affinity. mdpi.commdpi.comscielo.brcellmolbiol.orgscielo.br Studies often depict these interactions using 2D diagrams, showing dashed lines for hydrogen bonds and green lines for hydrophobic contacts. researchgate.netresearchgate.netcellmolbiol.org The number and strength of these interactions can vary depending on the specific alpha-glucosidase enzyme and the predicted binding pose. This compound has been reported to form multiple hydrogen bonds with alpha-glucosidase residues. nih.govfrontiersin.org
Binding Energy Calculations and Affinity Predictions
Molecular docking simulations provide estimated binding energy values, often expressed in kcal/mol or kJ/mol, which serve as indicators of the predicted binding affinity between this compound and the alpha-glucosidase enzyme. A more negative binding energy generally corresponds to a stronger predicted binding affinity. mdpi.comwindows.net this compound's binding energy is frequently used as a benchmark to evaluate the potential inhibitory activity of other compounds. mdpi.comherbmedpharmacol.comwindows.net
Reported binding energy values for this compound vary across different studies and enzyme sources:
Compound | Enzyme Source/PDB ID | Binding Energy (kcal/mol) | Binding Energy (kJ/mol) | Reference |
This compound | Alpha-glucosidase | -14.5 | -60.67 | nih.gov |
This compound | Alpha-glucosidase | -8.5 | -35.56 | nih.gov |
This compound | Alpha-glucosidase | -6.35 | -26.57 | researchgate.net |
This compound | Alpha-glucosidase (5ZCC) | -12.296 | -51.44 | windows.net |
This compound | Alpha-glucosidase (MAL12) | -9.4 | -39.33 | researchgate.net |
This compound | Alpha-glucosidase | -7.75 (Free energy) | -32.43 (Free energy) | herbmedpharmacol.com |
This compound | Alpha-glucosidase | -6.6 | -27.61 | frontiersin.org |
This compound | Alpha-glucosidase | -29.622 (MM/GBSA) | -123.94 (MM/GBSA) | nih.govmdpi.com |
This compound | Alpha-glucosidase (5ZCC) | -53.055 (MM-GBSA) | -221.98 (MM-GBSA) | windows.net |
This compound | Alpha-glucosidase | -34.3 | -143.51 | mdpi.com |
This compound | Alpha-glucosidase | 513.34 (Binding Free Energy) | 2147.8 (Binding Free Energy) | mdpi.com |
Note: Conversion factor: 1 kcal/mol ≈ 4.184 kJ/mol. Some sources report different energy terms (e.g., docking score vs. binding free energy from MM-GBSA).
Studies often compare this compound's binding energy to that of potential new inhibitors. For example, some compounds have shown lower (more favorable) binding energies than this compound in specific docking studies. nih.govherbmedpharmacol.comwindows.netresearchgate.netnih.govscielo.brfrontiersin.orgbohrium.comnih.gov
Molecular Dynamics Simulations for Binding Stability and Conformational Changes
Root Mean Square Deviation (RMSD) and Root Mean Square Fluctuation (RMSF) Analysis
In MD simulations of this compound-alpha-glucosidase complexes, RMSD plots show how the complex's structure evolves over time. nih.govmdpi.comcellmolbiol.orgnih.govmdpi.com Stable complexes typically exhibit RMSD values that reach a plateau after initial fluctuations. cellmolbiol.orgnih.govmdpi.com For this compound complexed with alpha-glucosidase, average RMSD values around 0.17 nm (1.7 Å) have been reported in 10 ns simulations. cellmolbiol.org In 100 ns simulations, this compound complexes have shown moderate RMSD values, generally between 0.25 and 0.3 nm, with some fluctuations. nih.gov Lower RMSD values generally suggest greater structural rigidity and stability of the complex. nih.govnih.govmdpi.com
RMSF analysis reveals the flexibility of different parts of the alpha-glucosidase enzyme when bound to this compound. cellmolbiol.orgmdpi.comtandfonline.comresearchgate.net Residues in loop regions often show higher RMSF values, indicating greater flexibility, while residues in structured regions like helices and beta-sheets tend to have lower fluctuations. tandfonline.com The binding of a ligand like this compound can affect the flexibility of residues in the binding pocket and other parts of the protein. cellmolbiol.org
Solvent Accessible Surface Area (SASA) Analysis
Analysis of SASA for alpha-glucosidase complexes, including those with this compound, can provide insights into how ligand binding affects the protein's exposure to the solvent. cellmolbiol.orgnih.govmdpi.comtandfonline.comrsc.org Some studies indicate that the SASA profile of alpha-glucosidase complexes decreases upon ligand binding compared to the apo enzyme, suggesting a reduction in the protein's accessible surface area due to the presence of the ligand in the binding pocket. nih.govmdpi.com SASA values for alpha-glucosidase have been reported to fluctuate within a certain range during simulations, with transient increases potentially indicating conformational changes. tandfonline.com
Analysis Type | Metric | Typical Observation for Stable Complex | This compound-Alpha-Glucosidase Findings (Examples) | Reference |
MD Simulation | RMSD (Protein Backbone) | Reaches a stable plateau | Average ~0.17 nm (10 ns); 0.25-0.3 nm (100 ns) | nih.govcellmolbiol.org |
MD Simulation | RMSF (Individual Residues) | Lower fluctuations in structured regions | Residue fluctuations observed | cellmolbiol.orgtandfonline.com |
MD Simulation | SASA (Protein) | May decrease upon ligand binding | Lower SASA compared to apo enzyme observed | nih.govmdpi.com |
Comparative Molecular Modeling of this compound with Synthetic and Natural Inhibitors
Molecular modeling studies have frequently compared the binding interactions of this compound with those of other synthetic and natural alpha-glucosidase inhibitors to understand their relative potency and binding modes. These studies often involve docking simulations to predict the preferred orientation and binding affinity of inhibitors within the enzyme's active site, followed by molecular dynamics simulations to assess the stability of the resulting complexes.
Research has shown that this compound binds to the carbohydrate binding site of alpha-glucosidase, similar to its carbohydrate substrates. dergipark.org.tr The molecular structure of this compound, which resembles carbohydrates, allows it to bind to this site. dergipark.org.tr This binding is characterized by numerous hydrogen bonds and, in some cases, hydrophobic interactions with residues in the active site. researchgate.netnih.govjppres.com
Comparative studies using molecular docking have evaluated the binding potential of natural alpha-glucosidase inhibitors against this compound. Some natural compounds have demonstrated comparable or even better binding potential than this compound, forming various non-hydrogen bonds and exhibiting lower binding energy, suggesting a better binding affinity. dergipark.org.tr For instance, studies comparing this compound with flavonoids like quercetin have shown that quercetin can exhibit a higher binding affinity and interact with more catalytic residues than this compound in certain alpha-glucosidase enzymes. jppres.comjppres.com
Molecular dynamics simulations are used to assess the stability of the complexes formed between the enzyme and different inhibitors, including this compound. These simulations can reveal the dynamic behavior of the enzyme-inhibitor complex over time, providing insights into the stability of the binding interactions. dergipark.org.trnih.gov Studies have shown that some natural inhibitors can form complexes with similar stability to that of this compound. dergipark.org.tr
Crystallographic studies have provided high-resolution structures of alpha-glucosidase enzymes in complex with this compound, revealing the precise details of their interactions at the atomic level. For example, the crystal structure of Bacillus subtilis alpha-amylase in complex with this compound showed an this compound-derived hexasaccharide bound in the active site, occupying specific subsites. nih.govresearchgate.net These structures illustrate the extensive hydrogen bonding networks and other interactions that stabilize the this compound-enzyme complex. researchgate.netacs.org
Species-Specific Differences in Enzyme Inhibition (e.g., Human vs. Rat Alpha-Glucosidase)
Significant species-specific differences exist in the inhibitory activity of this compound against alpha-glucosidase enzymes. Studies comparing the activity of this compound on human and rat alpha-glucosidases have consistently shown that this compound is a stronger inhibitor of the rat enzyme than the human enzyme. scirp.orgresearchgate.netscirp.orgthaiscience.info The inhibitory activity of this compound has been reported to be about ten times lower for the human enzyme compared to its rat counterpart. scirp.orgscirp.org
This differential activity is a critical consideration when extrapolating results from animal studies to humans. researchgate.net For instance, the homology between rat and human alpha-glucosidase is approximately 74%, which contributes to the observed differences in inhibitory effects. researchgate.netrsc.org
Computational studies, including homology modeling and binding affinity predictions, have been employed to investigate the reasons behind these species-specific differences. scirp.orgscirp.org By comparing the binding affinities of this compound to the catalytic domains of human and rat alpha-glucosidases, researchers can gain insights into the molecular basis for the observed activity differences. scirp.orgscirp.org
Human intestinal alpha-glucosidases, such as maltase-glucoamylase (MGAM) and sucrase-isomaltase (SI), have multiple catalytic domains (N-terminal and C-terminal). scirp.orgscirp.orgscholaris.ca Studies have compared the binding of this compound to these different domains in both human and rat enzymes. scirp.org The species difference in activity is brought about by a complex balance of interactions with these various domains. scirp.org
Experimental data on the inhibitory activity of this compound on human sucrase is greater than on rat sucrase, while rat maltase activity is more susceptible to inhibition by this compound compared to human maltase. rsc.org This suggests that the differential inhibition is not uniform across all alpha-glucosidase subtypes.
Structural Basis for Differential Inhibitory Potency
The structural differences in the active sites of alpha-glucosidases from different species, particularly between human and rat enzymes, contribute to the observed differential inhibitory potency of this compound. Computational studies comparing the ligand-binding pockets of human and rat alpha-glucosidases have been performed, often utilizing homology models when crystal structures are not available for all domains. scirp.org
The interaction residues of this compound within the active site have been identified through crystallographic analysis and docking studies. dergipark.org.trresearchgate.nettandfonline.com Differences in these interaction points or the conformation of the binding site between species can lead to variations in binding affinity and, consequently, inhibitory potency.
Molecular docking analysis has revealed that this compound forms crucial hydrogen bonds with specific catalytic residues in alpha-glucosidase enzymes. jppres.com Variations in the presence or position of these residues, or in the surrounding active site environment, can influence the binding mode and affinity of this compound. Studies have shown that while this compound interacts with catalytic residues like Asp215, other inhibitors might interact with additional catalytic residues, leading to higher potency. jppres.comjppres.com
The size of the ligand has also been suggested to play a role in species differences in activity, with larger ligands potentially showing larger species differences. scirp.orgscirp.org
Computational studies, including molecular docking and dynamics simulations, are valuable tools for elucidating the structural basis of these differences by visualizing and quantifying the interactions between this compound and the enzyme active site in different species. nih.govscirp.orgscirp.org These studies help to explain why this compound exhibits varying degrees of effectiveness across species and against different alpha-glucosidase subtypes.
Structure-activity Relationship Sar Studies of Acarbose and Its Analogs
Elucidation of Essential Structural Moieties for Alpha-Glucosidase Inhibition
SAR studies have aimed to identify the key structural features of acarbose responsible for its inhibitory activity against alpha-glucosidases. The pseudo-tetrasaccharide structure, particularly the acarviosine moiety, is considered essential for potent inhibition. researchgate.netresearchgate.net The presence of nitrogen within the acarviosine moiety, mimicking the transition state of substrate hydrolysis, contributes significantly to the high affinity of this compound for alpha-glucosidase enzymes. drugbank.comwikipedia.orgnih.govresearchgate.net
Based on research findings, the essential structural moieties and their proposed roles in alpha-glucosidase inhibition by this compound can be summarized as follows:
Structural Moiety | Key Features | Proposed Role in Inhibition |
Acarviosine Moiety | Cyclohexitol ring, 4-amino-4,6-dideoxyglucose | Essential for high affinity binding, mimics transition state, contains key interaction sites. |
Nitrogen Atom within Acarviosine Moiety | Part of the amino sugar | Crucial for potent inhibition, facilitates interactions in the active site. |
Glycosidic Linkages (α-1,4) | Connects the sugar units | Positions the molecule correctly within the enzyme's active site for effective inhibition. |
Maltose Moiety (at reducing terminus) | Two glucose units linked by α-1,4 bond | Contributes to binding affinity and specificity through interactions with enzyme subsites. |
Hydroxyl Groups | Present on all sugar rings and cyclohexitol | Involved in forming crucial hydrogen bonds with amino acid residues in the active site. |
Impact of Chemical Modifications on Inhibitory Potency and Selectivity
Modifications at the Reducing End
Modifications at the reducing end of the this compound molecule, specifically the maltose moiety, can impact its interaction with enzyme subsites. For instance, analogs with the "tail" glucose removed or flipped to an α(1-6) linkage have shown resistance to certain enzymatic transformations. wikipedia.org Nonreducing end modifications of this compound-like compounds have been suggested to positively contribute to their biological activities, a finding validated in several studies. nih.govresearchgate.netresearchgate.net
Research on this compound analogs resembling the rearrangement product, which can form at the alpha-amylase active site, suggests that modifications at the nonreducing end can lead to more effective alpha-amylase inhibitors. nih.govresearchgate.netresearchgate.net
Alterations to the Acarviosine Moiety
Alterations to the core acarviosine moiety are expected to have significant effects on inhibitory activity, as this part of the molecule is critical for binding and transition state mimicry. While specific detailed data on systematic alterations to the valienamine or the amino sugar unit within the acarviosine moiety and their direct impact on inhibitory potency compared to native this compound are not extensively detailed in the provided snippets, the importance of these structural elements is emphasized. The presence of the nitrogen atom and the specific arrangement of hydroxyl groups on the cyclohexitol ring are understood to be key for potent alpha-glucosidase inhibition. nih.govresearchgate.netresearchgate.net
Studies on other compound classes that inhibit alpha-glucosidase, such as flavonoids, highlight the importance of specific functional groups like hydroxyl groups and their positions for inhibitory activity and binding interactions with enzyme residues. researchgate.netnih.govresearchgate.nettandfonline.com This suggests that similar principles would apply to modifications of the acarviosine moiety of this compound.
Influence of Glycosidic Linkages
The nature and position of the glycosidic linkages connecting the different sugar units in this compound are crucial for orienting the molecule correctly within the enzyme's active site and interacting with specific subsites. This compound features alpha-1,4 glycosidic linkages. researchgate.netresearchgate.net The specific arrangement of these linkages in this compound, connecting the acarviosine moiety to the maltose unit, is integral to its competitive inhibition mechanism. drugbank.comnih.gov
Analogs with different glycosidic linkages or variations in the sugar units could exhibit altered binding modes and affinities, leading to changes in inhibitory potency and selectivity towards different glycosidases. For example, the ability of some enzymes to catalyze the transfer of the acarviosyl moiety of this compound to malto-oligosaccharides, forming this compound analogs with modified glycosylation patterns, results in compounds with significantly improved inhibitory activity towards alpha-amylase compared to this compound. nih.govscience.gov Acarstatins A and B, formed by the glycosylation of this compound with maltosyl and maltotriosyl units respectively via an alpha-1,4 linkage, showed substantially higher inhibitory activity against human salivary alpha-amylase. nih.gov
Here is a table summarizing the reported enhanced activity of Acarstatins A and B compared to this compound against human salivary alpha-amylase:
Compound | Modification | Inhibitory Activity (vs. Human Salivary α-Amylase) | Fold Enhancement vs. This compound |
This compound | Native structure | Reference | 1 |
Acarstatin A | O-α-D-maltosyl-(1→4)-acarbose | Significantly enhanced | 1584-fold |
Acarstatin B | O-α-D-maltotriosyl-(1→4)-acarbose | Significantly enhanced | 1478-fold |
Note: Data on specific IC50 values for this compound against human salivary α-amylase in the same study were not available in the provided snippets to include here, but the fold enhancement is reported. nih.gov
In Silico Approaches to SAR Prediction and Optimization
Computational methods, such as molecular docking and quantitative structure-activity relationship (QSAR) analysis, play a significant role in predicting and understanding the SAR of this compound and its analogs. acgpubs.orgacs.orgdost.gov.phdergipark.org.trresearchgate.netmdpi.commdpi.combiorxiv.org These in silico approaches complement experimental studies by providing insights into the binding interactions between inhibitors and alpha-glucosidase enzymes at the molecular level. nih.govresearchgate.nettandfonline.comacgpubs.orgacs.orgdost.gov.ph
Molecular docking is widely used to predict the binding poses and affinities of this compound and its analogs within the active site of alpha-glucosidase. nih.govresearchgate.nettandfonline.comacgpubs.orgacs.orgdost.gov.phresearchgate.netmdpi.commdpi.com This technique helps visualize the interactions, such as hydrogen bonds and hydrophobic contacts, formed between the inhibitor and key amino acid residues in the binding pocket. researchgate.netresearchgate.netacs.orgdost.gov.phdergipark.org.trresearchgate.net By analyzing the predicted binding modes and energies, researchers can infer how structural modifications might affect the interaction with the enzyme and thus influence inhibitory potency. acgpubs.orgacs.orgdost.gov.phresearchgate.netmdpi.com
QSAR studies aim to build mathematical models that correlate structural or physicochemical properties of a series of compounds with their biological activity. acs.orgmdpi.com By developing QSAR models for this compound analogs, it is possible to identify molecular descriptors that are important for alpha-glucosidase inhibition and predict the activity of new, unsynthesized compounds. acs.org This can guide the design and synthesis of novel inhibitors with improved properties. acs.orgmdpi.com
Other computational techniques, such as molecular dynamics simulations and MM/GBSA calculations, are also employed to gain a more comprehensive understanding of the stability of the enzyme-inhibitor complex and the binding free energy. mdpi.combiorxiv.org These methods provide dynamic insights into the interactions over time and offer a more refined estimation of binding affinity. mdpi.combiorxiv.org
In silico studies have been used to compare the binding of this compound and its analogs to different alpha-glucosidase enzymes, including those from different species, helping to explain observed differences in inhibitory activity. scirp.org They can also be used to evaluate the selectivity of inhibitors towards alpha-glucosidase versus other enzymes like alpha-amylase. dergipark.org.tr
Preclinical Investigations of Acarbose in Non-human Biological Systems
In Vitro Studies on Cellular Metabolism and Signaling Pathways
In vitro studies have begun to elucidate the direct effects of acarbose on cellular processes, particularly in the context of metabolic and vascular health. Research using vascular smooth muscle cells (VSMCs) has shown that this compound can inhibit migration and proliferation, key processes involved in the development of atherosclerosis. This effect appears to involve the modulation of specific signaling pathways. This compound has been found to upregulate microRNA-143 (miR-143) expression. MiR-143, in turn, negatively regulates Ras expression, impacting downstream signaling cascades such as the FAK/Src and PI3K/Akt pathways, which are critical for cell migration and proliferation nih.gov. This compound treatment reduced the phosphorylation of FAK and Src, as well as the expression of matrix metalloproteinases (MMPs), suggesting an attenuation of migration via the FAK/Src pathway. Additionally, this compound inhibited activated PI3K and Akt signals, along with Ras and PCNA expression and inactivated ERK signaling, indicating an impact on proliferation pathways nih.gov.
In the context of neuroprotection, in vitro studies using models of ischemia-reperfusion injury have demonstrated that this compound can confer significant neuroprotection. This protective effect is associated with the inhibition of the DAPK1-p53 interaction. This compound was found to prevent mitochondrial and lysosomal dysfunction and favorably modulate the expression of genes related to cell survival, inflammation, and regeneration. Furthermore, this compound treatment increased cell proliferation and differentiation in these in vitro models researchgate.netnih.gov.
Animal Model Research on Metabolic Homeostasis Beyond Glucose Absorption
Animal studies have been instrumental in revealing the broader metabolic effects of this compound, extending beyond its well-known inhibition of glucose absorption in the small intestine.
Modulation of Gut Microbiome Composition and Function
A significant area of preclinical investigation has focused on the impact of this compound on the gut microbiome. By inhibiting alpha-glucosidases, this compound increases the amount of undigested carbohydrates reaching the lower digestive system, providing a substrate for gut bacteria nih.govresearchgate.net. This leads to changes in the composition and function of the gut microbial community nih.govresearchgate.netnih.gov.
Studies in mice have shown that this compound treatment can alter the gut bacterial community structure in a diet-dependent and reversible manner nih.govnih.gov. High doses of this compound (e.g., 400 ppm) in mice fed a high-starch diet resulted in an expansion of Bacteroidaceae and Bifidobacteriaceae and a decrease in Verrucomicrobiaceae (such as Akkermansia muciniphila) and Bacteroidales S24-7 nih.govnih.gov. In mice on a high-fiber diet, a high dose of this compound led to a distinct community structure with increased representation of Bifidobacteriaceae and Lachnospiraceae nih.gov.
These changes in microbial composition are often associated with alterations in gut function, including the production of beneficial metabolites nih.govresearchgate.netnih.gov.
Impact on Host Metabolite Profiles (e.g., Short-Chain Fatty Acids)
The modulation of the gut microbiome by this compound directly influences the production of bacterial fermentation products, particularly short-chain fatty acids (SCFAs) nih.govresearchgate.netnih.govjst.go.jp. SCFAs, such as acetate, propionate, and butyrate, are produced by the fermentation of undigested carbohydrates in the colon and play crucial roles in host health, including providing energy for colonocytes, improving gut barrier integrity, and influencing metabolic and immune functions frontiersin.org.
Preclinical studies consistently show that this compound treatment increases the levels of SCFAs in the feces of mice nih.govresearchgate.netnih.gov. Specifically, butyrate levels were significantly increased in mice on both high-starch and high-fiber diets when treated with this compound nih.govnih.gov. Acetate and propionate levels also showed increases, although the significance could be diet-dependent nih.gov. This increase in SCFA production is considered a key mechanism by which this compound exerts beneficial effects beyond glucose control researchgate.netnih.gov.
Effects on Longevity and Age-Related Biological Processes in Model Organisms
Research in various model organisms has indicated that this compound can influence longevity and age-related processes. Studies in genetically heterogeneous mice have demonstrated that this compound treatment can extend lifespan researchgate.netnih.govfrontiersin.orgresearchgate.net. This effect appears to be sex-dependent, with more pronounced increases in median lifespan observed in male mice compared to females researchgate.netnih.govresearchgate.net. For instance, one study reported a 22% increase in male median lifespan and a 5% increase in female median lifespan researchgate.net.
The mechanisms underlying the longevity-enhancing effects of this compound are still being investigated but are thought to involve its impact on the gut microbiome and subsequent SCFA production researchgate.netnih.gov. The correlation between fecal SCFAs (acetate, butyrate, and propionate) and mouse longevity has been observed, suggesting a role for the gut microbiota in this process researchgate.netnih.gov.
Furthermore, this compound has shown potential in ameliorating symptoms in mouse models of age-related neurodegenerative conditions, such as a model of Leigh syndrome (Ndufs4 knockout mice). In this model, this compound suppressed disease symptoms and improved survival, which was associated with remodeling of the intestinal microbiome and altered SCFA production researchgate.net.
Preclinical Efficacy in Non-Diabetic Disease Models (e.g., Cancer, Neurodegenerative Conditions – mechanistic insights in animal models)
Beyond its effects on glucose metabolism and aging, preclinical studies have explored the potential of this compound in models of non-diabetic diseases, including cancer and neurodegenerative conditions, providing insights into the underlying mechanisms.
In a spontaneously-metastasizing mouse model of kidney cancer, this compound was found to slow tumor growth and promote protective immune responses mdpi.comresearchgate.net. Combining this compound with immunotherapy (anti-PD-1) or targeted therapy (rapamycin) significantly reduced lung metastases compared to control groups receiving monotherapy mdpi.comresearchgate.net. The delayed tumor outgrowth in this compound-treated mice was dependent on CD8 T cells, with increased frequencies of CD8 T cells in tumors that retained the ability to produce IFNγ, TNFα, perforin, and granzyme B mdpi.comresearchgate.net. This suggests an immunomodulatory mechanism in the anti-cancer effects of this compound mdpi.comresearchgate.netresearchgate.net. This compound is thought to enhance the efficacy of immunotherapy by modulating the gut microbiota and tryptophan metabolism, leading to increased CD8+ T cell infiltration in tumors researchgate.net. This recruitment appears to be mediated through the CXCL10-CXCR3 pathway, in a gut microbiota-dependent manner researchgate.net.
In the context of neurodegenerative conditions, as mentioned earlier, this compound has shown promise in a mouse model of Leigh syndrome by suppressing symptoms and improving survival, linked to gut microbiome alterations and SCFA production researchgate.net. In vitro studies also support a direct neuroprotective effect by preventing mitochondrial and lysosomal dysfunction and modulating gene expression related to cell survival and regeneration researchgate.netnih.gov.
Immunomodulatory Effects in Preclinical Models
Preclinical evidence suggests that this compound possesses immunomodulatory properties. In addition to its role in enhancing anti-tumor immunity through modulation of the gut microbiota and CD8 T cell responses mdpi.comresearchgate.netresearchgate.net, this compound has been investigated for its effects on inflammatory and autoimmune conditions.
Studies in a mouse model of collagen-induced arthritis (CIA), a model for rheumatoid arthritis, have shown that this compound can attenuate the incidence and severity of arthritis researchgate.netfrontiersin.org. This was associated with a reduction in pro-inflammatory cytokines, including TNF-α, IL-6, and IL-17, in paw tissues researchgate.net. This compound treatment also decreased the production of anti-collagen type II antibodies and reduced the levels of IL-17 and IFN-γ produced by collagen-reactive lymph node cells researchgate.net. The beneficial effects in this arthritis model were linked to the restoration of gut microbiota homeostasis and changes in the balance of T helper 17 (Th17) and regulatory T (Treg) cells in the gut frontiersin.org.
Furthermore, a combination therapy of this compound and cyclosporine A ameliorated imiquimod-induced psoriasis-like dermatitis in mice. This combination significantly reduced the percentages of IL-17- and IL-22-producing CD4+ T cells (Th17 and Th22 cells) and increased the percentage of Treg cells, suggesting an anti-inflammatory mechanism involving the modulation of T cell subsets nih.gov.
These preclinical findings highlight the diverse immunomodulatory effects of this compound, potentially mediated through its interaction with the gut microbiome and direct effects on immune cells and cytokine production.
Impact on Immune Cell Populations and Function
Research in mouse models has demonstrated that this compound can influence the composition and activity of various immune cell populations. Studies in a preclinical model of metastatic kidney cancer showed that delayed renal tumor outgrowth in mice treated with this compound occurred in a CD8 T cell-dependent manner. Tumors from these mice exhibited increased frequencies of CD8 T cells that maintained their ability to produce key cytokines like IFNγ and TNFα, as well as cytotoxic molecules such as perforin and granzyme B. nih.govresearchgate.netmdpi.com This suggests that this compound can promote protective anti-tumor immune responses involving CD8 T cells. nih.govmdpi.com
Furthermore, studies investigating this compound in a mouse model of imiquimod-induced psoriasis-like dermatitis observed that this compound treatment significantly reduced the infiltration of CD3+ T cells and GR-1+ neutrophils in the lesional skin. nih.gov this compound also led to a reduction in the percentage of IL-17-producing CD4+ T cells (Th17 cells) and IL-17- and IL-22-producing γδ T cells in the spleen. nih.gov Conversely, this compound increased the frequency of IL-10-producing CD4+ regulatory Tr1 T cells in the spleen and small intestine, indicating a potential shift towards a more regulatory immune profile in this context. nih.gov These findings highlight that this compound can exert both local and systemic anti-inflammatory and immune modulation effects in non-human systems. nih.gov
The observed effects on immune cells, particularly the increase in CD8 T cells in tumor models and modulation of T cell subsets in inflammatory models, suggest a multifaceted impact of this compound on the immune system in preclinical settings.
Interactions with Immunotherapeutic Agents
Preclinical studies have explored the potential for this compound to interact with and enhance the efficacy of immunotherapeutic agents, particularly in the context of cancer. In a preclinical model of metastatic kidney cancer, combining this compound with anti-PD-1 therapy significantly reduced lung metastases compared to control mice receiving only anti-PD-1. nih.govresearchgate.netmdpi.com This suggests a synergistic effect between this compound and anti-PD-1 immunotherapy in inhibiting tumor progression and metastasis. nih.govmdpi.com
One proposed mechanism for this interaction involves the modulation of the gut microbiota by this compound. researchgate.netnih.gov Studies in murine models have shown that this compound can enhance the efficacy of anti-PD-1 immunotherapy by altering the composition of the gut microbiota and influencing tryptophan metabolism. researchgate.netnih.gov This modulation can lead to changes in chemokine expression, such as the promotion of CXCL10 expression via the tryptophan catabolite indoleacetate, which in turn facilitates the recruitment of CD8+ T cells into tumors, thereby sensitizing tumors to anti-PD-1 therapy. researchgate.netnih.gov The effects of this compound on promoting CD8+ T cell recruitment through the CXCL10-CXCR3 pathway have been shown to be dependent on the gut microbiota in these models. researchgate.netnih.gov Specific bacterial species, such as Bifidobacterium infantis, which are enriched by this compound, have also been shown to improve the response to anti-PD-1 therapy in mice. researchgate.netnih.gov
Acarbose Metabolism and Biotransformation in Biological Systems Mechanistic/non-clinical Focus
Role of Intestinal Bacteria in Acarbose Degradation
Intestinal bacteria play a crucial role in the degradation of this compound. fda.govnih.govwikipedia.org this compound increases the amount of undigested starch that reaches the colon, thereby enriching carbohydrate-degrading bacteria and altering the gut microbiota composition and its fermentation products. aginganddisease.orggethealthspan.com This can lead to an increase in the abundance of bacteria capable of producing short-chain fatty acids (SCFAs). aginganddisease.orggethealthspan.com
Specific gut bacteria, such as Klebsiella grimontii TD1, have been identified as this compound-degrading organisms. researchgate.net The presence of such bacteria is associated with variability in the clinical efficacy of this compound. researchgate.netresearchgate.net Studies have shown that K. grimontii TD1 can effectively metabolize this compound. researchgate.net
This compound also influences the composition of the gut microbiota, increasing the relative abundance of saccharolytic bacteria like Lactobacillus and Bifidobacterium, while potentially depleting other species such as Bacteroides, Alistipes, and Clostridium. gutmicrobiotaforhealth.com The effect of this compound on intestinal fermentation products, such as SCFAs, can influence host physiology. aginganddisease.org SCFAs, primarily produced by the fermentation of starch by intestinal bacteria, are considered beneficial to health. aginganddisease.org
Research using model starch-degrading Bacteroides species, Bacteroides ovatus (Bo) and Bacteroides thetaiotaomicron (Bt), has shown differential responses to this compound. asm.orgnih.govbiorxiv.org While this compound interferes with the ability of some bacteria to grow on starch, the specific mechanisms and species-level variations are complex. asm.orgnih.govbiorxiv.org
Enzymatic Biotransformation Pathways
This compound is metabolized within the gastrointestinal tract through enzymatic hydrolysis, primarily by intestinal bacteria and to a lesser extent by digestive enzymes. fda.govnih.govdrugbank.com Human enzymes do contribute to this compound transformation; for instance, pancreatic alpha-amylase can perform a rearrangement reaction on the molecule. wikipedia.org However, bacterial alpha-amylases from the gut microbiome are also capable of degrading this compound. wikipedia.org
A key enzymatic pathway involves glycoside hydrolases produced by gut microbiota. wikipedia.org Specifically, an this compound-degrading glucosidase, termed Apg, has been identified in Klebsiella grimontii TD1. researchgate.net This enzyme hydrolyzes this compound into smaller molecules. researchgate.net
While this compound is known to inhibit host enzymes like alpha-glucosidase and pancreatic alpha-amylase, gut bacteria possess their own enzymatic systems, such as the starch utilization system (Sus) in Bacteroides, which can interact with this compound. asm.orgnih.govbiorxiv.org Studies suggest that this compound can target periplasmic GH97 enzymes within Bacteroides and affect starch processing at multiple points, including competing for transport and binding to transcriptional regulators. asm.orgnih.govbiorxiv.org
The biosynthesis of this compound itself is a complex process carried out by microorganisms like Actinoplanes sp. SE50/110. nih.govnih.govresearchgate.netfrontiersin.orgresearchgate.net This involves a series of enzymatic reactions, including those catalyzed by cyclitol modifying enzymes, glycosyltransferases (e.g., AcbI), and pseudoglycosyltransferases (e.g., AcbS). nih.govresearchgate.netfrontiersin.org Understanding the microbial biosynthetic pathways provides insight into the structural components and potential degradation targets of this compound.
Characterization of Metabolites and Their Biological Activity
This compound is extensively metabolized in the gastrointestinal tract, yielding at least 13 identified metabolites that have been separated chromatographically from urine specimens. fda.govdrugbank.com Approximately one-third of these metabolites are absorbed into the systemic circulation and subsequently excreted renally. drugbank.com
The major metabolites identified are 4-methylpyrogallol derivatives, which exist as sulfate, methyl, and glucuronide conjugates. fda.govdrugbank.com
Research has characterized the degradation products of this compound mediated by bacterial enzymes like Apg from K. grimontii TD1. researchgate.netresearchgate.net Apg degrades this compound into acarviosine-glucose and acarviosine. researchgate.netresearchgate.net
Studies have investigated the biological activity of these metabolites. One metabolite, formed by the cleavage of a glucose molecule from this compound, has been shown to retain some alpha-glucosidase inhibitory activity. fda.govdrugbank.comnih.gov However, the degradation products acarviosine-glucose and acarviosine exhibit significantly reduced or almost complete loss of inhibitory activity on alpha-amylase compared to the parent compound this compound. researchgate.netresearchgate.net This loss of inhibitory function in metabolites contributes to the mechanism by which bacterial degradation can potentially reduce the efficacy of this compound. researchgate.net
While the parent compound this compound is the primary active entity responsible for inhibiting intestinal alpha-glucosidases and pancreatic alpha-amylase, the formation and absorption of metabolites, such as the 4-methylpyrogallol derivatives, indicate systemic exposure to these transformation products. fda.govdrugbank.com
Here is a table summarizing the key metabolites and their reported activity:
Metabolite Name | Formation Pathway | Reported Biological Activity (Alpha-Glucosidase/Amylase Inhibition) |
This compound | - | Potent Inhibitor nih.govresearchgate.net |
Acarviosine-glucose | Bacterial degradation (e.g., by Apg) researchgate.netresearchgate.net | Approximately 20% reduced inhibition compared to this compound researchgate.netresearchgate.net |
Acarviosine | Bacterial degradation (e.g., by Apg) researchgate.netresearchgate.net | Almost completely lost inhibition researchgate.netresearchgate.net |
Metabolite (glucose cleavage) | Digestive enzymes and/or intestinal bacteria fda.govdrugbank.com | Retains some inhibitory activity fda.govdrugbank.comnih.gov |
4-methylpyrogallol derivatives (sulfate, methyl, glucuronide conjugates) | Absorbed metabolites fda.govdrugbank.com | Activity not explicitly detailed in sources for this context |
Advanced Analytical Methodologies for Acarbose Research
High-Performance Liquid Chromatography (HPLC) and Ultra-Performance Liquid Chromatography (UPLC)
High-Performance Liquid Chromatography (HPLC) and its faster, higher-resolution counterpart, Ultra-Performance Liquid Chromatography (UPLC), are indispensable tools in acarbose research. These techniques are widely used for the separation, identification, and quantification of this compound in various matrices, including bulk drug material, pharmaceutical formulations, and biological samples. HPLC methods for this compound often utilize reversed-phase chromatography with specific columns designed for carbohydrate analysis, such as amino silane bonded silica gel or carbohydrate columns. nih.govresearchgate.netgoogle.com Detection is commonly achieved using UV detectors, typically at wavelengths around 210 nm, although this compound itself has a weak chromophore, which can pose challenges for UV detection of certain impurities. google.comresearchgate.netthermofisher.com Alternative detection methods like Charged Aerosol Detection (CAD) or Evaporative Light Scattering Detection (ELSD) are also employed, offering more universal detection capabilities for compounds lacking strong UV absorbance. thermofisher.comnih.gov
UPLC offers significant advantages over conventional HPLC, including shorter analysis times, increased sensitivity, and improved resolution, making it particularly useful for analyzing complex samples and detecting low-level impurities. scispace.commdpi.com
Method Development and Validation for Research Applications
The development of robust and reliable HPLC and UPLC methods for this compound involves careful selection of stationary phases, mobile phases, and detection parameters to achieve optimal separation of this compound from impurities and matrix components. For instance, methods have been developed using C18 columns with mobile phases consisting of acetonitrile and phosphate buffer at specific pH values and flow rates. magtechjournal.com The European Pharmacopoeia outlines an HPLC method with UV detection at 210 nm for the quantitation of this compound and its related substances. researchgate.netresearchgate.net
Method validation is a critical step in ensuring the reliability and accuracy of analytical methods for this compound research. Validation parameters typically include linearity, precision, accuracy, specificity, detection limit, and quantification limit, in accordance with guidelines from regulatory bodies like the International Conference on Harmonization (ICH). magtechjournal.comresearchgate.netalliedacademies.org Stability-indicating HPLC methods are also developed and validated to ensure that the method can accurately quantify this compound in the presence of its degradation products. researchgate.netdntb.gov.ua
Detection and Quantification of this compound and its Structural Analogs
HPLC and UPLC are routinely used for the quantitative determination of this compound in pharmaceutical tablets and other formulations. nih.govmagtechjournal.comresearchgate.net These methods enable precise measurement of this compound content, which is crucial for quality control.
Furthermore, these chromatographic techniques are essential for the detection and quantification of structural analogs and impurities present in this compound samples. This compound is produced via fermentation, and this process can yield various related acarviosyl-containing components that differ in their sugar units. researchgate.netthermofisher.com Identifying and quantifying these impurities is vital for assessing the purity and quality of this compound. HPLC methods, often coupled with sensitive detectors like CAD or mass spectrometry, are employed to separate and detect these closely related compounds. thermofisher.comxml-journal.net
Spectroscopic Techniques (e.g., Fourier Transform Infrared Spectroscopy (FTIR), Nuclear Magnetic Resonance (NMR), Fluorescence Spectroscopy)
Spectroscopic techniques provide valuable information about the structure, functional groups, and interactions of this compound.
Fourier Transform Infrared Spectroscopy (FTIR) can be used for the quantitative determination of this compound in tablets. alliedacademies.org An ATR-FTIR method has been developed that allows for the direct analysis of finely ground tablets without extensive sample preparation, offering a fast and non-destructive alternative to chromatographic methods for quality control. alliedacademies.org
Nuclear Magnetic Resonance (NMR) spectroscopy is a powerful technique for the structural elucidation of this compound and its impurities. nih.govcapes.gov.brnih.gov Both 1D and 2D NMR experiments, such as 1H and 13C NMR, provide detailed information about the arrangement of atoms and functional groups within the molecule. LC-NMR, which couples liquid chromatography with NMR, allows for the online separation and structural identification of components in complex mixtures, proving useful for impurity profiling of this compound. nih.govcapes.gov.br
Fluorescence spectroscopy can be applied in research involving this compound, particularly in studies investigating its interaction with enzymes or other biological molecules. While this compound itself may not be strongly fluorescent, its interaction with fluorescent probes or enzymes can be monitored using this technique. rsc.orgspectroscopyonline.com For example, fluorescence spectroscopy has been used to study how this compound affects the functional abilities of enzymes like α-amylase. spectroscopyonline.com
Capillary Electrophoresis (CE)
Capillary Electrophoresis (CE) is another separation technique utilized in this compound analysis. CE offers high separation efficiency and can be applied to the analysis of this compound and its related substances. researchgate.netnih.govresearchgate.netingentaconnect.com Methods based on capillary zone electrophoresis (CZE) have been developed for the determination of this compound, sometimes involving derivatization to facilitate detection, such as with 7-aminonaphthalene-1,3-disulfonic acid (ANDS). researchgate.netresearchgate.netingentaconnect.comnih.gov Alternatively, detection can be achieved by monitoring the unsaturated cyclitol moiety of this compound at low wavelengths (below 200 nm). researchgate.netresearchgate.netingentaconnect.com CE methods can be validated for parameters like precision, accuracy, and linearity, and have been successfully applied to the analysis of this compound in pharmaceutical formulations. nih.govingentaconnect.com Affinity capillary electrophoresis (ACE) has also been employed to study the interaction of this compound with proteins like human serum albumin (HSA).
Enzyme-Based Biosensors for this compound Detection
Enzyme-based biosensors offer a different approach for the detection and study of this compound, leveraging its inhibitory effect on enzymes like alpha-glucosidase. researchgate.netrsc.orgmdpi.comingentaconnect.com These biosensors typically incorporate an enzyme, such as alpha-glucosidase, immobilized on a transducer. mdpi.comnih.gov The principle of detection often relies on monitoring the enzyme's activity in the presence of a substrate and observing the reduction in activity caused by this compound's inhibitory action. rsc.orgnih.gov Electrochemical biosensors have been developed for this purpose, where the enzymatic reaction produces a detectable electrochemical signal that changes upon inhibition by this compound. mdpi.comnih.gov These biosensors can be used for screening potential alpha-glucosidase inhibitors, including this compound and compounds from natural sources. rsc.orgmdpi.com
Mass Spectrometry (MS) for Structural Elucidation and Impurity Profiling
Mass Spectrometry (MS) is a powerful technique for determining the mass-to-charge ratio of molecules, providing crucial information for structural elucidation and impurity profiling of this compound. xml-journal.netnih.govcapes.gov.brnih.gov When coupled with separation techniques like HPLC or UPLC (LC-MS or UPLC-MS), MS allows for the analysis of complex mixtures, enabling the identification of this compound and its related impurities based on their mass fragmentation patterns. xml-journal.netnih.govcapes.gov.br
LC-MS and LC-MS/MS (tandem mass spectrometry) are particularly valuable for identifying and characterizing impurities in this compound bulk drug material and formulations. xml-journal.netnih.govcapes.gov.br This integrated approach allows for the online separation of impurities by chromatography followed by their structural investigation using MS. nih.govcapes.gov.br By analyzing the fragmentation patterns, researchers can deduce the structures of unknown impurities, including structural analogs that may differ from this compound in their sugar subunits. nih.govcapes.gov.br MS can also be used for impurity profiling, providing a comprehensive picture of the related compounds present in a sample. nih.gov
The combination of LC-NMR and LC-MS has proven particularly effective for the comprehensive impurity profiling and structural elucidation of components in this compound samples. nih.govcapes.gov.br
Synergistic and Combinatorial Research Approaches with Acarbose
Interactions with Natural Products and Phytochemicals
Studies have investigated the combined effects of acarbose with various natural products and phytochemicals on the inhibition of carbohydrate-hydrolyzing enzymes like α-glucosidase and α-amylase. These combinations can lead to synergistic or additive inhibitory effects, offering potential for improved glycemic control.
Specific phytochemicals, including flavonoids like baicalein, apigenin, quercetin, luteolin, and (+)-catechin, have been studied for their interactions with this compound against α-glucosidase and α-amylase. For instance, combinations of baicalein, quercetin, or luteolin with this compound have shown synergistic inhibition of α-glucosidase. acs.org Conversely, the combination of (+)-catechin with this compound exhibited antagonistic inhibition of α-glucosidase. acs.org Apigenin and baicalein have also shown interactions with this compound against α-amylase, with combinations showing additive inhibition at lower concentrations and antagonistic inhibition at higher concentrations. acs.org
Cyanidin-3-galactoside, a natural anthocyanin, has also demonstrated synergistic inhibitory effects on intestinal α-glucosidase (maltase and sucrase) when combined with a low dose of this compound. tandfonline.com The percentage inhibition of the mixtures was significantly increased compared to this compound alone. tandfonline.com
Other natural compounds, such as betulinic acid (a pentacyclic triterpene), have shown a synergistically inhibitory effect when combined with this compound against α-glucosidase. semanticscholar.org Similarly, studies on Thai folk anti-diabetes remedies have indicated that certain decoction extracts can exhibit potent synergistic inhibitory effects with this compound on α-glucosidase. tjnpr.org
Molecular docking studies have been employed to understand the interactions of phytochemicals with enzymes targeted by this compound. For example, naringin and rutin from Capparis spinosa have shown high affinities to both α-amylase and α-glucosidase, comparable to that of this compound, suggesting they could work synergistically. rjpbcs.com
Enhanced Enzyme Inhibition Kinetics
Cyanidin-3-galactoside, when studied for its kinetic inhibition against intestinal sucrase, showed a mixed-type inhibition. tandfonline.com Its synergistic effect with this compound on α-glucosidase (sucrase and maltase) was observed at low doses of cyanidin-3-galactoside. tandfonline.com
Betulinic acid, which is a non-competitive inhibitor of α-glucosidase, exhibited a synergistically inhibitory effect when combined with this compound, a competitive inhibitor. semanticscholar.org This suggests that the two inhibitors may bind to different sites on the enzyme, leading to a more pronounced inhibitory effect. semanticscholar.org
Studies on the combination of lawsone methyl ether (LME) with this compound against α-glucosidase demonstrated synergistic effects at various dosage levels, with a notable synergistic effect observed at specific concentrations of both compounds, resulting in a high percentage of enzyme inhibition. jyoungpharm.org
Molecular Basis of Synergistic Binding
Molecular modeling and docking studies provide insights into the molecular basis of the synergistic binding observed between this compound and natural compounds. These studies help to visualize how these molecules interact with the active sites or other regions of the target enzymes.
Molecular modeling has shown that baicalein can have a higher affinity to the noncompetitive binding site of maltase, glucoamylase, and isomaltase subunits of α-glucosidase compared to the active site. acs.org This differential binding could contribute to the synergistic inhibition observed when combined with this compound, which is a competitive inhibitor and binds to the active site. acs.orgsemanticscholar.org
Molecular docking and dynamics simulations have been used to explore the interactions of various compounds with α-glucosidase and α-amylase. For instance, studies on betulinic acid and this compound suggest that their synergistic effect on α-glucosidase inhibition may be due to their binding to different sites within the active pocket of the enzyme. semanticscholar.org The presence of betulinic acid may enhance the binding affinity between α-glucosidase and this compound. semanticscholar.org
Molecular docking studies involving lawsone methyl ether and this compound with α-glucosidase have suggested that their synergistic interaction might be related to their distinct molecular structures and sizes, potentially leading to reduced steric hindrance and more efficient binding of LME to the enzyme. jyoungpharm.org
In silico studies of phytochemicals from Nigella sativa have indicated that (−)-catechin shows a possible synergistic effect with this compound toward α-glucosidase inhibition, while apigenin shows an additive effect with this compound toward α-amylase inhibition. mdpi.com Molecular docking analysis in these studies helps to understand the binding modes and interactions that contribute to these effects. mdpi.com
Molecular docking studies comparing this compound with natural compounds like maysin and luteolin have shown that these natural compounds can have comparable or even greater binding energies to the active site of maltase-glucoamylase than this compound, suggesting strong interactions. mdpi.com
Combinatorial Effects with Other Enzyme Inhibitors (Preclinical/Mechanistic)
Beyond combinations with natural products, research has also explored the combinatorial effects of this compound with other synthetic enzyme inhibitors at a preclinical and mechanistic level. These studies aim to understand if combining this compound with other inhibitors targeting the same or different enzymes involved in carbohydrate metabolism can lead to improved or altered inhibitory profiles.
This compound is known to competitively and reversibly inhibit both pancreatic α-amylase and membrane-bound intestinal α-glucosidases. drugbank.com Its inhibitory potency against α-glucosidases follows the order of glucoamylase > sucrase > maltase > isomaltase. drugbank.com Combining this compound with other inhibitors that target these same enzymes but potentially through different mechanisms or at different binding sites could lead to enhanced or synergistic inhibition.
Preclinical studies investigating the combination of this compound with other enzyme inhibitors focus on the mechanistic aspects of their interaction and the resulting impact on enzyme activity. While specific examples of combinatorial effects with synthetic enzyme inhibitors beyond those naturally derived are less prominent in the provided search results, the principle of combining inhibitors with different binding sites or mechanisms of action, as seen with natural products, is relevant. For instance, the observation that this compound (competitive inhibitor) and betulinic acid (non-competitive inhibitor) bind to different sites and exhibit synergistic effects provides a mechanistic basis for exploring combinations with other non-competitive or allosteric inhibitors. semanticscholar.org
The concept of combining inhibitors to achieve better therapeutic outcomes is also highlighted in the context of overcoming limitations of single-drug therapy, such as potential drug tolerance or insufficient efficacy. jyoungpharm.org Exploring combinations of this compound with other enzyme inhibitors at a preclinical level allows for the investigation of potential synergistic interactions, altered kinetic profiles, and the molecular basis of these combined effects before moving to clinical studies.
Emerging Themes and Future Directions in Acarbose Research
Exploration of Novel Biological Targets and Non-Canonical Mechanisms
Beyond its classical inhibition of alpha-glucosidases and alpha-amylase, research is delving into previously unrecognized biological targets and non-canonical mechanisms of acarbose. Studies suggest that this compound may exert effects through pathways independent of its direct enzymatic inhibition in the small intestine. One area of investigation involves the potential of this compound to influence the gut microbiome, which in turn can impact metabolic processes and potentially contribute to its observed benefits, including weight management and effects on glucagon-like peptide-1 (GLP-1) levels. nih.govclinicaltrials.gov The interaction with gut bacteria and the potential inactivation of this compound by microbiome-derived enzymes like this compound kinases (Maks) represent a significant area of emerging research, highlighting a complex interplay between the drug and the host microbiome. princeton.edunih.gov Furthermore, research is exploring the impact of this compound on intracellular signaling pathways, such as the MAPK pathways, which are involved in cellular responses to insulin/IGF1 signals and inflammatory processes. nih.gov The potential for this compound to act as a "caloric restriction mimetic" by mimicking some of the metabolic changes associated with caloric restriction, independent of substantial net caloric reduction, is also being investigated as a potential non-canonical mechanism contributing to its effects, including potential links to longevity. clinicaltrials.govresearchgate.net Additionally, this compound is being explored for its potential to target alpha-glucosidase in Candida albicans, suggesting a possible role in mitigating candidiasis by affecting fungal cell wall integrity and virulence factors like biofilm formation and morphological switching. nih.gov
Development of this compound-Derived Probes for Biochemical Studies
The structural features of this compound, particularly its pseudo-oligosaccharide nature and inhibitory activity, make it a valuable scaffold for developing biochemical probes. These probes can be utilized to investigate the activity and structure of glycosidases and amylases, as well as to explore their interactions with inhibitors. Research involves designing and synthesizing this compound analogs with modifications that allow for labeling or immobilization, facilitating studies on enzyme kinetics, binding sites, and mechanisms of action. The development of activity-based protein profiling (ABPP) probes based on this compound-like structures is an example of this direction, enabling the selective labeling and study of retaining amylases from various biological sources. researchgate.net Such probes can aid in the discovery of new enzyme inhibitors and in understanding the functional roles of glycosidases in different biological systems.
Integration of Multi-Omics Data in this compound Research
The advent of multi-omics technologies (genomics, transcriptomics, proteomics, metabolomics, and microbiomics) is providing unprecedented opportunities to gain a holistic understanding of this compound's effects at a systems level. Integrating data from these diverse platforms allows researchers to explore how this compound influences gene expression, protein profiles, metabolic pathways, and the composition and function of the gut microbiome. nih.govnih.govrsc.org This integrated approach can help identify novel biomarkers of response to this compound, elucidate the complex interplay between the drug, the host, and the microbiome, and uncover previously unknown mechanisms of action. For instance, multi-omics data integration is being used to study the impact of this compound on the kidneys in Rattus norvegicus, revealing shifts in gene expression cascades and pathway enrichment. researchgate.net Challenges in multi-omics data integration, such as standardization and data analysis, are being addressed with advanced computational methods. nih.govrsc.org
Advanced Computational Design of this compound Analogs and Mimetics
Computational approaches are playing an increasingly vital role in the design and discovery of novel this compound analogs and mimetics with potentially improved efficacy, specificity, or reduced side effects. Techniques such as molecular docking, molecular dynamics simulations, and quantitative structure-activity relationship (QSAR) modeling are employed to predict the binding affinity and inhibitory potential of designed compounds against target enzymes like alpha-glucosidase and alpha-amylase. herbmedpharmacol.comacs.orgmdpi.comnih.gov Advanced computational design, including the use of machine learning and generative models, is being explored to generate novel molecular structures that mimic the inhibitory properties of this compound or target alternative pathways. mathiasbernhard.chtuwien.ac.at These computational methods can significantly accelerate the lead discovery process and guide the synthesis of promising new compounds. Studies have utilized computational docking to evaluate the binding of potential inhibitors from natural sources, using this compound as a reference standard. mdpi.comresearchgate.net
Q & A
Q. What are the primary mechanisms of action of Acarbose in glycemic control, and how are these mechanisms experimentally validated?
this compound inhibits intestinal α-glucosidase enzymes, delaying carbohydrate digestion and reducing postprandial hyperglycemia. Methodologically, this is validated via in vitro enzyme assays (e.g., PNPG substrate hydrolysis) and kinetic analyses (Lineweaver-Burk plots) to determine inhibition type (competitive/mixed) . Clinical trials corroborate this by measuring postprandial glucose reduction (e.g., 1.63–3.62 mmol/L decrease with 50–300 mg doses) .
Q. What experimental designs are standard for evaluating this compound efficacy in clinical trials?
Randomized, double-blind, placebo-controlled trials (RCTs) with impaired glucose tolerance (IGT) or type 2 diabetes (T2D) cohorts are standard. Key endpoints include:
Q. How is this compound dosage optimized in pharmacological studies, and what are common dose-response relationships?
Dosage optimization involves titration (e.g., 50–300 mg t.i.d.) with incremental HbA1c reductions. A meta-analysis showed dose-dependent postprandial glucose lowering (1.63 mmol/L at 50 mg vs. 3.62 mmol/L at 300 mg) . Trials often use 100 mg t.i.d. for balancing efficacy and gastrointestinal tolerability .
Q. What quality control methods ensure this compound purity in pharmaceutical research?
Pharmacopeial standards include:
- Purity : HPLC with UV detection, comparing peak areas of related substances (e.g., ≤0.5% impurities) .
- Residual solvents : Heavy metal testing via atomic absorption spectroscopy (≤10 ppm lead) .
Advanced Research Questions
Q. How do molecular docking studies resolve contradictions in this compound’s inhibition type (competitive vs. mixed)?
Discrepancies arise from methodological differences: in silico docking often predicts competitive inhibition by binding active sites, while in vitro kinetics (e.g., Hanes-Wolff plots) may suggest mixed inhibition due to allosteric effects. Multi-method validation (e.g., Eisenthal-Cornish-Bowden plots) is critical .
Q. What molecular pathways beyond α-glucosidase inhibition contribute to this compound’s metabolic effects?
this compound upregulates miR-10a-5p and miR-664 in the ileum, suppressing proinflammatory cytokines (e.g., TNF-α) via MAPK pathways. This is validated through miRNA sequencing and Western blotting in diabetic rat models .
Q. How do researchers address conflicting data on this compound’s cardiovascular benefits across meta-analyses and RCTs?
The MERIA meta-analysis (7 RCTs) reported cardiovascular risk reduction (HR 0.65), while individual trials like STOP-NIDDM showed 49% risk reduction. Heterogeneity arises from population differences (e.g., baseline HbA1c, IGT vs. T2D) and endpoint definitions (e.g., composite vs. individual events) . Sensitivity analyses and subgroup stratification (e.g., HbA1c ≥7%) mitigate these issues .
Q. What advanced analytical techniques quantify this compound’s pharmacokinetics and pharmacodynamics?
- Pharmacokinetics : LC-MS/MS for plasma concentration profiling, focusing on low bioavailability (<2%) due to minimal systemic absorption .
- Pharmacodynamics : Continuous glucose monitoring (CGM) to track postprandial fluctuations, combined with mechanistic modeling (e.g., HOMA-IR for insulin resistance) .
Q. How is this compound integrated into combination therapy regimens, and what methodological considerations apply?
In metformin-insufficient T2D patients, add-on this compound (100 mg b.i.d.) reduced HbA1c by 1.02% (P=0.0001) in a 24-week RCT. Key considerations include:
Q. What surrogate markers validate this compound’s long-term cardioprotective effects in preclinical studies?
Carotid intima-media thickness (CIMT) is a key surrogate; in STOP-NIDDM, this compound reduced CIMT progression by 50% (0.02 mm vs. 0.05 mm in placebo, P=0.027) via postprandial glucose modulation .
Methodological Tables
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Please be aware that all articles and product information presented on BenchChem are intended solely for informational purposes. The products available for purchase on BenchChem are specifically designed for in-vitro studies, which are conducted outside of living organisms. In-vitro studies, derived from the Latin term "in glass," involve experiments performed in controlled laboratory settings using cells or tissues. It is important to note that these products are not categorized as medicines or drugs, and they have not received approval from the FDA for the prevention, treatment, or cure of any medical condition, ailment, or disease. We must emphasize that any form of bodily introduction of these products into humans or animals is strictly prohibited by law. It is essential to adhere to these guidelines to ensure compliance with legal and ethical standards in research and experimentation.