molecular formula C18H21N5O2 B1666894 Alogliptin CAS No. 850649-61-5

Alogliptin

Cat. No.: B1666894
CAS No.: 850649-61-5
M. Wt: 339.4 g/mol
InChI Key: ZSBOMTDTBDDKMP-OAHLLOKOSA-N
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Description

Crystallographic Properties

This compound exhibits distinct polymorphic forms, with crystallographic studies revealing:

Parameter Free Base Benzoate Salt
Crystal System Orthorhombic Orthorhombic
Space Group P212121 P212121
Unit Cell Dimensions a = 28.4593(6) Å, b = 9.8727(2) Å, c = 8.0666(2) Å a = 28.8260(8) Å, b = 9.9654(4) Å, c = 8.1477(8) Å
Z (Formula Units) 4 4
Density 1.3097 g/cm³ 1.31 g/cm³ (calculated)

The free base crystallizes with two independent molecules (denoted A and B) in the asymmetric unit, differing only in hydrogen-bond connectivity. The pyrimidinedione ring adopts a planar conformation, while the cyanobenzyl group is nearly perpendicular (82.6–87.7° dihedral angle).

Stereochemical Features

The (3R)-aminopiperidine moiety is critical for binding to dipeptidyl peptidase-4 (DPP-4). X-ray co-crystallography (PDB: 3g0b) shows:

  • The (R)-configuration positions the amino group to form salt bridges with Glu205/Glu206 in DPP-4.
  • π-stacking between the pyrimidinedione ring and Tyr547 stabilizes the enzyme-inhibitor complex.

Comparative Analysis of Free Base vs. Benzoate Salt Forms

Solubility and Stability

Property Free Base Benzoate Salt
Aqueous Solubility High (>20 mg/mL across pH 3–11) Sparingly soluble (2–3% at 25°C)
Hygroscopicity Non-hygroscopic Non-hygroscopic
Thermal Stability Glass transition at 66–77°C Stable up to 183°C (melting point)

The benzoate salt’s reduced solubility enhances formulation stability, while the free base’s high solubility facilitates rapid dissolution.

Conformational Differences

  • Piperidine Ring : In the free base, the NH2 group adopts an equatorial position, whereas the benzoate salt’s protonated NH3+ group is axial.
  • Hydrogen Bonding : The free base forms a 2D network via N–H···O interactions between pyrimidinedione carbonyls and piperidine amines. In contrast, the benzoate salt’s NH3+ group engages in three intermolecular N–H···O bonds with benzoate anions, creating layered structures.

Spectroscopic Signatures

Technique Free Base Benzoate Salt
IR (cm⁻¹) 1695 (C=O), 2230 (C≡N) 1705 (C=O), 2224 (C≡N), 1558 (COO⁻)
Raman (cm⁻¹) 1280, 1703 1248, 1654, 2950
1H NMR δ 7.76 (d, aromatic), 3.35 (m, piperidine) δ 7.76 (d, aromatic), 3.42 (m, piperidine)

The benzoate salt’s IR spectrum includes additional peaks at 1701 cm⁻¹ (benzoate C=O) and 1558 cm⁻¹ (asymmetric COO⁻ stretch).

Properties

IUPAC Name

2-[[6-[(3R)-3-aminopiperidin-1-yl]-3-methyl-2,4-dioxopyrimidin-1-yl]methyl]benzonitrile
Source PubChem
URL https://pubchem.ncbi.nlm.nih.gov
Description Data deposited in or computed by PubChem

InChI

InChI=1S/C18H21N5O2/c1-21-17(24)9-16(22-8-4-7-15(20)12-22)23(18(21)25)11-14-6-3-2-5-13(14)10-19/h2-3,5-6,9,15H,4,7-8,11-12,20H2,1H3/t15-/m1/s1
Source PubChem
URL https://pubchem.ncbi.nlm.nih.gov
Description Data deposited in or computed by PubChem

InChI Key

ZSBOMTDTBDDKMP-OAHLLOKOSA-N
Source PubChem
URL https://pubchem.ncbi.nlm.nih.gov
Description Data deposited in or computed by PubChem

Canonical SMILES

CN1C(=O)C=C(N(C1=O)CC2=CC=CC=C2C#N)N3CCCC(C3)N
Source PubChem
URL https://pubchem.ncbi.nlm.nih.gov
Description Data deposited in or computed by PubChem

Isomeric SMILES

CN1C(=O)C=C(N(C1=O)CC2=CC=CC=C2C#N)N3CCC[C@H](C3)N
Source PubChem
URL https://pubchem.ncbi.nlm.nih.gov
Description Data deposited in or computed by PubChem

Molecular Formula

C18H21N5O2
Source PubChem
URL https://pubchem.ncbi.nlm.nih.gov
Description Data deposited in or computed by PubChem

DSSTOX Substance ID

DTXSID90234130
Record name Alogliptin
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Description DSSTox provides a high quality public chemistry resource for supporting improved predictive toxicology.

Molecular Weight

339.4 g/mol
Source PubChem
URL https://pubchem.ncbi.nlm.nih.gov
Description Data deposited in or computed by PubChem

Solubility

Sparingly soluble
Record name Alogliptin
Source DrugBank
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CAS No.

850649-61-5
Record name Alogliptin
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Record name Alogliptin [INN]
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Record name Alogliptin
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Record name Alogliptin
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Record name 2-[[6-[(3R)-3-aminopiperidin-1-yl]-3-methyl-2,4-dioxopyrimidin-1-yl]methyl]benzonitrile
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Record name ALOGLIPTIN
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Record name Alogliptin
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Preparation Methods

Nucleophilic Substitution with (R)-3-Aminopiperidine

A widely cited method involves reacting 2-((6-chloro-3-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)methyl)benzonitrile with (R)-3-aminopiperidine dihydrochloride under basic conditions. As detailed in EP3292112B1, the reaction proceeds in isopropanol/water at 65–70°C with sodium carbonate and potassium iodide, yielding alogliptin free base after 12–14 hours. Acidification with HCl followed by benzoic acid treatment furnishes the benzoate salt in 80% yield (40 g from 50 g starting material).

Key Conditions

  • Temperature: 65–70°C
  • Catalysts: K iodide (5 mol%)
  • Base: Na₂CO₃ (3 equiv)
  • Workup: Dichloromethane extraction and recrystallization from ethanol.

Limitations of Resolution-Based Methods

Early routes employed Boc-protected (R)-3-aminopiperidine, requiring deprotection with HCl post-condensation. This introduced bottlenecks, including low yields (45–50%) from inefficient crystallizations and racemization during Boc removal.

Asymmetric Hydrogenation for Chiral Amine Synthesis

Ruthenium-Catalyzed Enantioselective Hydrogenation

A breakthrough method from 2021 utilizes nicotinamide (6) as a low-cost precursor to 1,4,5,6-tetrahydropyridine-3-carboxamide (7). Ruthenium catalysts (e.g., RuCl₂[(R)-Xyl-SynPhos]) under acidic conditions (H₂SO₄) enable asymmetric hydrogenation, affording (R)-3-aminopiperidine derivatives with >99% enantiomeric excess (ee).

Reaction Parameters

  • Substrate: 1,4,5,6-Tetrahydropyridine-3-carboxamide (7)
  • Catalyst: Ru/Xyl-SynPhos (0.5 mol%)
  • Pressure: 50 bar H₂
  • Solvent: MeOH/H₂O
  • Yield: 95%.

Advantages Over Resolution

This approach eliminates the need for chiral auxiliaries or enzymatic resolution, reducing raw material costs by 60%. The atom economy and scalability make it preferable for industrial applications.

Hofmann Rearrangement in Late-Stage Functionalization

Conversion of Amide to Amine

The 2021 process integrates Hofmann rearrangement to convert 2-((6-chloro-3-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)methyl)benzonitrile (10) into the primary amine intermediate. Iodobenzene diacetate (PIDA) in H₂O/2-PrOH at 20°C facilitates this transformation without epimerization.

Optimized Conditions

  • Reagent: PIDA (1.1 equiv)
  • Solvent: H₂O/2-PrOH (1:1)
  • Temperature: 20°C
  • Yield: 87.2% after crystallization.

Crystallization and Purity Control

Post-rearrangement, the crude product is purified via antisolvent crystallization (toluene/heptane), achieving 99.31% HPLC purity. Benzoate salt formation in isopropanol/EtOAc further elevates purity to 99.79%.

Alternative Methods and Structural Analogues

Spirocyclic Aminopiperidine Analogues

A 2010 study explored this compound analogues with spirocyclic rings on the piperidine moiety. Cyclopropyl rings were constructed prior to piperidine formation, though yields were suboptimal (35–40%). This highlights the sensitivity of DPP-4 inhibition to structural modifications.

Comparative Analysis of Preparation Methods

Parameter Traditional Route Asymmetric Hydrogenation
Starting Material Cost High ($320/kg) Low ($110/kg)
Chiral Resolution Required Yes No
Total Yield 50% 87.2%
Purity (HPLC) 99.79% 99.79%
Catalytic Efficiency N/A 95% ee, 0.5 mol% Ru

Industrial Scale-Up Considerations

Solvent and Waste Management

The asymmetric hydrogenation route reduces solvent consumption by 40% compared to traditional methods, as water/2-PrOH mixtures replace dichloromethane.

Regulatory Compliance

Process impurities (e.g., dimer byproducts) are controlled via isopropyl acetate washes and dust removal filtration, meeting ICH Q3A guidelines.

Chemical Reactions Analysis

Types of Reactions

Alogliptin undergoes various chemical reactions, including:

Common Reagents and Conditions

Common reagents used in the chemical reactions of this compound include:

    Oxidizing agents: Such as hydrogen peroxide and potassium permanganate.

    Reducing agents: Such as sodium borohydride and lithium aluminum hydride.

    Substituting agents: Such as halogens and alkylating agents

Major Products Formed

The major products formed from the chemical reactions of this compound depend on the specific reaction conditions and reagents used. For example, oxidation may yield oxides, while substitution reactions may result in halogenated or alkylated derivatives .

Scientific Research Applications

Management of Type 2 Diabetes Mellitus

Alogliptin is primarily indicated for improving glycemic control in adults with type 2 diabetes. It is often prescribed as monotherapy or in combination with other antidiabetic medications such as metformin or pioglitazone. Clinical trials have demonstrated that this compound effectively reduces hemoglobin A1c (HbA1c) levels, with studies showing a significant reduction of approximately 0.58% compared to placebo after 16 weeks .

Cardiovascular Safety and Outcomes

The EXAMINE trial evaluated the cardiovascular safety of this compound in patients with a recent acute coronary syndrome. Results indicated that this compound did not increase the risk of major adverse cardiovascular events compared to placebo, making it a viable option for diabetic patients with cardiovascular concerns . Additionally, long-term studies suggest that early initiation of this compound may prevent the progression of atherosclerosis in diabetic patients without prior cardiovascular disease .

Potential Renal Benefits

Research indicates that this compound may have protective effects on renal function in patients with type 2 diabetes. The drug has been associated with a lower incidence of renal impairment compared to other antidiabetic agents, suggesting its utility in managing diabetes-related kidney complications .

Efficacy and Safety Data

This compound has been shown to be effective in reducing fasting plasma glucose levels and achieving target HbA1c levels without causing significant weight gain or hypoglycemia, which are common concerns with other diabetes medications . The most frequent side effects reported include headaches, gastrointestinal disturbances, and skin rashes .

Case Study: Long-term Efficacy

In a cohort study involving 341 subjects, early initiation of this compound was linked to improved long-term cardiovascular outcomes without increasing cancer risk. This study highlights the potential for this compound not only to manage diabetes but also to contribute positively to overall patient health outcomes over extended periods .

Research Findings

  • SPEAD-A Trial: This trial demonstrated that this compound significantly attenuated the progression of carotid atherosclerosis over two years, reinforcing its role in cardiovascular protection for diabetic patients .
  • Phase 3 Trials: Multiple phase 3 trials have confirmed the efficacy and safety profile of this compound across diverse populations, including Asian cohorts, showing consistent results in HbA1c reduction and tolerability .

Mechanism of Action

Alogliptin exerts its effects by inhibiting the DPP-4 enzyme, which is responsible for the degradation of incretin hormones. By inhibiting DPP-4, this compound increases the levels of active incretin hormones, such as GLP-1 and GIP. These hormones enhance insulin secretion from pancreatic beta cells and reduce glucagon secretion from pancreatic alpha cells, leading to improved glycemic control. The inhibition of DPP-4 by this compound also results in prolonged active incretin levels, contributing to its therapeutic effects .

Comparison with Similar Compounds

Efficacy in Glycemic Control

Alogliptin shows non-inferiority to other DPP-4 inhibitors (e.g., sitagliptin, linagliptin, saxagliptin, vildagliptin) in reducing HbA1c levels. In a network meta-analysis of eight randomized controlled trials (RCTs), this compound 25 mg/day achieved comparable HbA1c reductions (−0.62% to −1.05%) to other DPP-4 inhibitors when added to metformin and sulfonylurea dual therapy . A phase III trial comparing this compound with fotagliptin (a novel DPP-4 inhibitor) found similar HbA1c target attainment (<7.0%) between the two drugs (37.0% vs. 35.5%) .

Table 1: HbA1c Reduction Across DPP-4 Inhibitors

Drug HbA1c Reduction (%) Study Reference
This compound −0.62 to −1.05
Sitagliptin −0.74 to −0.94
Linagliptin −0.68 to −0.90
Saxagliptin −0.60 to −0.88

Table 2: Adverse Event Rates in DPP-4 Inhibitors

Drug Hypoglycemia (%) Headache (%) Skin-Related AEs (%)
This compound 1.2–3.5 6.8–7.5 12.8–15.2
Sitagliptin 1.5–4.0 5.0–6.2 10.1–12.5
Linagliptin 1.0–2.8 4.5–5.5 9.5–11.0
Pharmacokinetic and Pharmacodynamic Differences
  • Potency : Linagliptin has a lower in vitro IC50 (1 nM) compared to this compound (24 nM), but maximal DPP-4 inhibition is similar across the class (>80% inhibition at therapeutic doses) .
  • Renal Excretion: Unlike linagliptin (non-renal excretion), this compound requires dose adjustment in renal impairment due to its renal elimination .
  • Pediatric Use : this compound exposure (Cmax, AUC) is 23–29% lower in pediatric patients than adults, but DPP-4 inhibition remains comparable (80–90% Emax) .
Structural and Mechanistic Insights

This compound’s cyanopyrrolidine moiety interacts with DPP-4’s catalytic site (Arg125, Glu205/206), while its tricyclic structure stabilizes binding via π-interactions with Tyr547 . Modifications in newer inhibitors (e.g., trelagliptin’s fluorine atom) enhance binding affinity or duration . Novel compounds like imigliptin and fotagliptin mimic this compound’s efficacy but with structural variations aimed at improving PK profiles .

Table 3: Structural and Binding Characteristics

Drug Key Structural Features DPP-4 Binding Interactions
This compound Cyanopyrrolidine, tricyclic core Arg125 (H-bond), Glu205/206, Tyr547
Trelagliptin Fluorine substitution Trp659 (hydrophobic interaction)
Linagliptin Xanthine scaffold Non-covalent binding to S2 pocket
Specialized Effects
  • Lipid Profile : Anagliptin, unlike this compound, significantly improves dyslipidemia (reduces LDL and triglycerides), highlighting a differentiation in ancillary benefits .
  • Beta-Cell Function : Both this compound and imigliptin enhance beta-cell function (HOMA-β increase) without affecting insulin resistance (HOMA-IR) .

Biological Activity

Alogliptin is a selective dipeptidyl peptidase-4 (DPP-4) inhibitor utilized primarily in the management of type 2 diabetes mellitus (T2DM). Its mechanism of action involves the inhibition of DPP-4, an enzyme responsible for the degradation of incretin hormones such as glucagon-like peptide-1 (GLP-1) and glucose-dependent insulinotropic polypeptide (GIP). By inhibiting DPP-4, this compound increases the levels of these hormones, leading to enhanced insulin secretion and improved glycemic control.

Pharmacokinetics and Pharmacodynamics

Absorption and Distribution:
this compound exhibits high bioavailability with a median time to peak concentration (Tmax) ranging from 1 to 2 hours and a half-life of approximately 12.4 to 21.4 hours. It is well-distributed in tissues, with a mean volume of distribution of 60.9 L, indicating extensive tissue penetration .

DPP-4 Inhibition:
Clinical studies show that this compound achieves significant DPP-4 inhibition, with mean plasma DPP-4 activity reduced by over 80% after 24 hours following administration. The inhibition rates after single doses range from 74.3% to 94% at 24 hours, and up to 99% after multiple doses over a period of 14 days .

Clinical Efficacy

This compound has been evaluated in various clinical trials for its efficacy in lowering hemoglobin A1c (HbA1c) levels and fasting plasma glucose (FPG).

Case Study Results

Study DesignPopulationTreatment DurationHbA1c ReductionFPG ReductionWeight Change
Phase 3 Trial506 patients with T2DM16 weeks-0.5% to -0.6% vs. placeboSignificant reduction (P ≤ 0.004)No weight gain
Combination TherapyAdd-on to metformin or pioglitazone26 weeks-0.8% with pioglitazoneNot specifiedNo significant change
Long-term StudyRandomized double-blind trial26 weeksModest improvement not statistically significantNot specifiedNo significant change

In a Phase 3 trial conducted across China, Taiwan, and Hong Kong, this compound significantly reduced HbA1c levels compared to placebo when used alone or in combination with other antidiabetic agents . The results indicated that patients receiving this compound were more likely to achieve target HbA1c levels of ≤6.5% or ≤7.0% compared to those on placebo.

Safety Profile

This compound is generally well-tolerated, with few adverse effects reported. The most common side effects include mild gastrointestinal disturbances and skin reactions such as pruritus. Importantly, no significant weight gain has been associated with its use, making it a favorable option for patients concerned about weight management .

Impact on Beta-cell Function

Research indicates that this compound may have a protective effect on pancreatic beta-cell function. However, studies have shown mixed results regarding its ability to improve beta-cell function metrics such as the proinsulin:insulin ratio and HOMA-β scores. While some studies suggest potential benefits, long-term data are required to confirm these findings .

Q & A

Basic Research Questions

Q. What experimental methodologies are recommended for validating the stability-indicating properties of analytical methods for Alogliptin in combination therapies?

  • Use ion-pair reverse-phase high-performance liquid chromatography (RP-HPLC) with experimental design (e.g., factorial design) to optimize robustness and accuracy. For example, Mahrouse & Lamie (2019) validated a method for simultaneous quantification of this compound, Metformin, and Repaglinide using Design of Experiments (DoE) to assess factors like pH, buffer concentration, and column temperature . Accuracy was confirmed via spike-recovery tests (80–120% concentration ranges), with % recovery within 98–102% .

Q. How do pharmacokinetic (PK) and pharmacodynamic (PD) profiles of this compound differ between pediatric and adult populations with type 2 diabetes mellitus (T2DM)?

  • A randomized open-label study compared single-dose PK/PD in children (12.5 mg), adolescents (25 mg), and adults (25 mg). This compound’s median Tmax (2–4 h) and DPP-4 inhibition (>80% at peak) were consistent across groups. However, adolescents exhibited 24% lower steady-state Cmax and 11% lower AUC0-tau vs. adults, necessitating dose adjustments for pediatric cohorts .

Q. What evidence supports this compound’s cardiovascular safety in high-risk T2DM patients post-acute coronary syndrome (ACS)?

  • The EXAMINE trial (n=5,380) demonstrated non-inferiority of this compound vs. placebo for major adverse cardiovascular events (MACE; HR=0.96, 95% CI upper boundary=1.16) over 18 months. Subgroup analysis of patients on metformin + sulfonylurea (n=1,398) showed no increased risk of hypoglycemia or pancreatitis .

Q. How does this compound’s efficacy as monotherapy compare to traditional therapies like sulfonylureas in Japanese T2DM patients?

  • A 12-week dose-ranging trial (n=480) found this compound (6.25–50 mg/day) reduced HbA1c by 0.54–0.87% vs. placebo (p<0.001), with sustained efficacy over 52 weeks. Unlike sulfonylureas, this compound showed no dose-dependent weight gain or severe hypoglycemia .

Advanced Research Questions

Q. How can researchers address heterogeneity in meta-analyses of this compound’s dose-response relationships?

  • Use hierarchical Bayesian models to account for covariates like renal function, age, and drug-drug interactions. A meta-analysis of this compound’s PD data highlighted limitations in existing studies due to unadjusted confounders (e.g., comorbidities, baseline HbA1c). Sensitivity analyses and subgroup stratification are critical to mitigate bias .

Q. What structural modifications enhance this compound’s DPP-4 inhibitory activity?

  • Structure-activity relationship (SAR) studies identified multi-substituted pyridone scaffolds as key. For example, compound 11a (IC50=3.2 nM) outperformed this compound (IC50=5.0 nM) by replacing the quinazolinone core with pyridone and optimizing hydrophobic interactions via fluorophenyl groups .

Q. What methodological challenges arise in post hoc analyses of this compound’s long-term safety in triple therapy (e.g., metformin + sulfonylurea + this compound)?

  • The EXAMINE trial’s post hoc analysis (n=1,398) faced confounding from variable adherence to background therapies. Propensity score matching and time-dependent Cox models were used to adjust for imbalances in baseline HbA1c and renal function .

Q. How can sustained-release formulations of this compound improve patient adherence and glycemic control?

  • A 2<sup>3</sup> factorial design optimized injectable PLGA-based in situ gel implants (ISGI). NMP/DMSO solvents reduced burst release (<15% at 24 h) and extended therapeutic exposure (>14 days). In diabetic rats, a single ISGI dose maintained glucose-lowering effects comparable to daily oral dosing .

Methodological Recommendations

  • For PK/PD modeling : Integrate sparse sampling protocols (e.g., 0–72 h post-dose) with nonlinear mixed-effects models (NONMEM) to account for inter-individual variability .
  • For clinical trial design : Use adaptive non-inferiority margins (e.g., HR<1.3 for MACE) and pre-specified subgroup analyses to enhance statistical rigor .
  • For analytical validation : Apply DoE and robustness testing (e.g., Taguchi models) to optimize chromatographic conditions and minimize variability .

Retrosynthesis Analysis

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Feasible Synthetic Routes

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Please be aware that all articles and product information presented on BenchChem are intended solely for informational purposes. The products available for purchase on BenchChem are specifically designed for in-vitro studies, which are conducted outside of living organisms. In-vitro studies, derived from the Latin term "in glass," involve experiments performed in controlled laboratory settings using cells or tissues. It is important to note that these products are not categorized as medicines or drugs, and they have not received approval from the FDA for the prevention, treatment, or cure of any medical condition, ailment, or disease. We must emphasize that any form of bodily introduction of these products into humans or animals is strictly prohibited by law. It is essential to adhere to these guidelines to ensure compliance with legal and ethical standards in research and experimentation.