molecular formula C27H22Cl2N4 B1669197 Clofazimine CAS No. 2030-63-9

Clofazimine

Cat. No.: B1669197
CAS No.: 2030-63-9
M. Wt: 473.4 g/mol
InChI Key: WDQPAMHFFCXSNU-UHFFFAOYSA-N
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Description

Historical Perspectives and Repositioning of Clofazimine

This compound, originally known as B663, was first synthesized in 1954 at Trinity College, Dublin, as part of a project aimed at finding treatments for tuberculosis (TB). wikipedia.orgnih.govresearchgate.netacs.orgpnas.org Although initial studies suggested it was ineffective against Mycobacterium tuberculosis, its effectiveness against Mycobacterium leprae, the causative agent of leprosy, was identified in 1959. wikipedia.orgnih.govnih.gov

Early Development and Initial Therapeutic Applications (e.g., Leprosy)

Following the discovery of its efficacy against M. leprae, this compound underwent clinical trials in the 1960s. wikipedia.org These trials demonstrated its effectiveness in treating leprosy, leading to its launch in 1969 under the brand name Lamprene by Novartis. wikipedia.org this compound became a crucial component of multidrug therapy (MDT) for leprosy, particularly for multibacillary leprosy and erythema nodosum leprosum (ENL), an inflammatory complication of leprosy. wikipedia.orgmedscape.com Its inclusion, alongside dapsone and rifampicin, in the WHO-recommended MDT regimen starting in 1981 significantly improved treatment outcomes and helped in the global control of the disease. medscape.comnih.govwikipedia.org Early clinical trials in patients with lepromatous leprosy showed clinical and bacteriological improvement with this compound treatment, either alone or in combination with dapsone. nih.gov

Re-evaluation and Repurposing in Modern Therapeutics

With the rise of drug-resistant infections, particularly multidrug-resistant tuberculosis (MDR-TB), interest in this compound was revived in the 1990s due to its activity against drug-resistant strains of M. tuberculosis observed in vitro and in mouse models. frontiersin.orgfrontiersin.org This led to its repurposing as a key drug in the treatment of DR-TB. frontiersin.orgfrontiersin.org Observational studies and clinical trials have evaluated this compound-containing regimens for DR-TB, showing promising results in terms of treatment success rates and the potential to shorten treatment duration compared to older regimens. pnas.orgfrontiersin.orgmdpi.com For instance, a this compound-containing regimen in Bangladesh demonstrated a high relapse-free cure rate in patients with MDR-TB. pnas.org

Beyond mycobacterial infections, the repurposing of this compound has extended to other areas. Research has explored its potential in treating nontuberculous mycobacterial (NTM) infections, such as those caused by Mycobacterium avium complex (MAC) and Mycobacterium abscessus. wikipedia.orgclinicaltrials.euoup.com In vitro studies suggest this compound can prevent macrolide resistance in MAC and M. abscessus. oup.com this compound has also been investigated for its anti-inflammatory and immunomodulatory properties, leading to its experimental use in certain autoimmune conditions like discoid lupus erythematosus and psoriasis. wikipedia.orgnih.govdrugbank.com More recently, studies have explored its potential against SARS-CoV-2 and certain cancers, including multiple myeloma and malignant pleural mesothelioma, highlighting its diverse pharmacological activities beyond its initial antimicrobial applications. researchgate.netclinicaltrials.euwilliamscancerinstitute.comashpublications.orgnih.gov

Current Research Landscape and Significance of this compound

The current research landscape for this compound is dynamic, focusing on optimizing its use in existing indications and exploring its potential in new therapeutic areas. Research continues to investigate its mechanism of action, which is not yet fully understood but is believed to involve interference with bacterial DNA and effects on cellular membranes, potentially through redox cycling and the generation of reactive oxygen species. nih.govdrugbank.compatsnap.com It is also thought to increase the activity of bacterial phospholipase A2, leading to the accumulation of toxic lysophospholipids. nih.govmdpi.com

Clinical trials are ongoing to evaluate novel this compound-containing regimens for both drug-susceptible and drug-resistant tuberculosis, aiming to shorten treatment duration and improve outcomes. frontiersin.orgfrontiersin.orgoup.com Studies are also exploring different formulations and routes of administration, such as inhaled this compound for NTM lung infections, to potentially enhance drug delivery to the site of infection. clinicaltrials.eu

Furthermore, the immunosuppressive and anti-inflammatory effects of this compound are being investigated for their therapeutic potential in autoimmune diseases and as an adjuvant in cancer immunotherapy. wikipedia.orgdrugbank.comwilliamscancerinstitute.com Research in cancer models suggests this compound can enhance the efficacy of immunotherapy and reduce severe side effects by modulating immune cell responses. williamscancerinstitute.com The significance of this compound research lies in its potential to address critical unmet medical needs, particularly in the face of rising antimicrobial resistance and the need for more effective and less toxic therapies for various complex diseases.

Here is a table summarizing some research findings related to this compound's efficacy in drug-resistant tuberculosis:

Study TypePatient PopulationRegimen InclusionSuccess Rate (%)Comparison Regimen Success Rate (%)Significance (p-value)Reference
Retrospective-observationalMDR-TB patientsThis compound38% (15/39)Not specifiedNot specified mdpi.com
Standardized RegimenMDR-TB patientsThis compound84.5% (435/515)Not specifiedNot specified mdpi.com
Meta-analysis of CCRsDR-TB patientsThis compound65.1%47.3% (Standard Regimen)0.034 mdpi.com
Randomized Controlled TrialDrug-susceptible TBThis compound-based 16-week regimenRelapse: 3.2%Relapse: 1.9% (Standard 24-week regimen)Non-inferiority shown (p=0.723 for relapse at 3 months) oup.com

Properties

IUPAC Name

N,5-bis(4-chlorophenyl)-3-propan-2-yliminophenazin-2-amine
Source PubChem
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InChI

InChI=1S/C27H22Cl2N4/c1-17(2)30-24-16-27-25(15-23(24)31-20-11-7-18(28)8-12-20)32-22-5-3-4-6-26(22)33(27)21-13-9-19(29)10-14-21/h3-17,31H,1-2H3
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InChI Key

WDQPAMHFFCXSNU-UHFFFAOYSA-N
Source PubChem
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Canonical SMILES

CC(C)N=C1C=C2C(=NC3=CC=CC=C3N2C4=CC=C(C=C4)Cl)C=C1NC5=CC=C(C=C5)Cl
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Molecular Formula

C27H22Cl2N4
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DSSTOX Substance ID

DTXSID7022839
Record name Clofazimine
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Molecular Weight

473.4 g/mol
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Physical Description

Solid
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Solubility

0.3 [ug/mL] (The mean of the results at pH 7.4), 1.51e-03 g/L
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CAS No.

2030-63-9
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Melting Point

210-212 °C, 210 - 212 °C
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Mechanisms of Action of Clofazimine

Mechanisms Targeting Mycobacteria

Beyond earlier proposed mechanisms involving membrane interaction and reactive oxygen species generation, more recent studies have shed light on specific cellular targets within mycobacteria. drugbank.comoup.com

Targeting Mycobacterial Integration Host Factor (mIHF)

Emerging research indicates that clofazimine targets the mycobacterial integration host factor (mIHF) in Mycobacterium tuberculosis. biorxiv.org mIHF is a vital nucleoid-associated protein that plays a critical role in maintaining DNA integrity, organizing the chromosome, and regulating gene expression in mycobacteria. biorxiv.org Studies have demonstrated that this compound binds to mIHF, thereby inhibiting its ability to bind DNA and consequently disrupting mycobacterial gene expression. biorxiv.org This interaction with a fundamental DNA-associated protein represents a potentially unique mechanism among existing antibiotics and may contribute to this compound's distinct activity against Mycobacterium tuberculosis. biorxiv.org

Role of Iron Homeostasis and Mycobactin Interaction

Iron acquisition is essential for the survival and virulence of mycobacteria within the host. Mycobacteria produce siderophores, such as mycobactin, to chelate and transport iron. researchgate.netmdpi.com While the precise interaction between this compound and mycobacterial iron homeostasis or mycobactin was not extensively detailed in the provided search results, the critical role of iron uptake pathways in mycobacterial survival suggests that interference with these processes could represent a potential mechanism by which this compound exerts its effects. Mycobactin is a specific type of hydroxamate siderophore produced by mycobacteria. researchgate.netmdpi.com

Anti-Inflammatory and Immunomodulatory Mechanisms

This compound's anti-inflammatory and immunomodulatory activities are crucial for managing inflammatory complications associated with mycobacterial diseases, such as erythema nodosum leprosum. nih.govdrugbank.comoup.com These effects involve modulating the function of various immune cells, including T lymphocytes, neutrophils, and monocytes. drugbank.comoup.comoup.com

Inhibition of T-Lymphocyte Activation and Proliferation

A significant aspect of this compound's immunomodulatory effect is its ability to inhibit the activation and proliferation of T lymphocytes. nih.govdrugbank.comoup.com This inhibitory effect has been observed in in vitro studies at concentrations relevant to therapeutic levels achieved during leprosy treatment. oup.com The suppression of T-lymphocyte activity is mediated through multiple pathways. drugbank.comoup.com

Direct Antagonism of T-cell Kv1.3 Potassium Channels

This compound has been identified as a direct antagonist of Kv1.3 potassium channels found on T cells. drugbank.comoup.com Kv1.3 channels are voltage-gated ion channels that are critical for maintaining the membrane potential and regulating calcium signaling in activated T lymphocytes. oup.com By blocking these channels, this compound disrupts potassium efflux, which in turn impairs the membrane repolarization required for sustained calcium influx through calcium release-activated Ca2+ (CRAC) channels. oup.com Altered calcium signaling can suppress the activity of the calcineurin-NFAT pathway, a signaling cascade essential for the transcription of the interleukin-2 (IL-2) gene. oup.comresearchgate.net Reduced IL-2 production contributes to the inhibition of T-cell proliferation. oup.comresearchgate.net

Promotion of E-series Prostaglandin and Reactive Oxygen Species Release from Neutrophils and Monocytes

This compound can indirectly suppress T-cell proliferation by stimulating the release of E-series prostaglandins, particularly prostaglandin E2 (PGE2), and reactive oxygen species (ROS) from neutrophils and monocytes. oup.comoup.com In mixed leukocyte cultures, this compound promotes the release of these molecules from bystander phagocytes. oup.comoup.com PGE2, derived from arachidonic acid via cyclooxygenase, can activate EP2 receptors on T cells, leading to increased intracellular cAMP levels, which are known to inhibit T-cell proliferation. oup.com ROS produced by phagocytes, often through the activation of NADPH oxidase by arachidonic acid, can also non-specifically interfere with T-cell proliferation. oup.com Studies have demonstrated that this compound treatment enhances PGE2 production by macrophages, and PGE2 is known to suppress T-cell proliferation. asm.org

Myeloperoxidase System Inhibition

This compound has been shown to inhibit the myeloperoxidase (MPO) system. nih.govafricaresearchconnects.com MPO is a heme enzyme predominantly found in neutrophils and monocytes, where it plays a key role in innate immunity and inflammation by generating potent oxidants, such as hypochlorous acid (HOCl), from hydrogen peroxide and chloride ions. nih.govnih.gov Research indicates that this compound inhibits the MPO system by scavenging the chlorinating oxidants produced. nih.govafricaresearchconnects.com Studies have demonstrated that this compound inhibits the chloride-stimulated oxidation of NADH, a reaction catalyzed by MPO. nih.govafricaresearchconnects.com Furthermore, this compound was found to be a more effective scavenger of HOCl compared to dapsone. nih.govafricaresearchconnects.com This ability to neutralize MPO-derived oxidants is believed to contribute to this compound's anti-inflammatory properties. nih.govafricaresearchconnects.com

Here is a summary of some of the research findings discussed:

MechanismKey FindingsReferences
Targeting Mycobacterial Integration Host Factor (mIHF)This compound binds to mIHF, inhibits its DNA binding, and interferes with mycobacterial gene expression in M. tuberculosis. biorxiv.org
Inhibition of T-Lymphocyte Activation and ProliferationThis compound suppresses mitogen- and antigen-driven proliferative responses of isolated T lymphocytes in vitro. drugbank.comoup.com
Direct Antagonism of T-cell Kv1.3 Potassium ChannelsThis compound interferes with Ca2+ signaling in activated T cells by antagonizing Kv1.3 potassium channels, impairing IL-2 production. drugbank.comoup.comresearchgate.net
Promotion of PGE2 and ROS Release from Neutrophils and MonocytesThis compound promotes the release of PGE2 and ROS from neutrophils and monocytes, indirectly suppressing T-cell proliferation. oup.comoup.comasm.org
Myeloperoxidase System InhibitionThis compound scavenges chlorinating oxidants like HOCl generated by the MPO system, inhibiting MPO-catalyzed reactions. nih.govafricaresearchconnects.com

Modulation of Cytokine Production (e.g., IL-2, IL-1 Receptor Antagonist)

This compound has been shown to influence the production of various cytokines, playing a role in its anti-inflammatory and immunomodulatory effects. Studies have indicated that this compound can inhibit the production of IL-2 in T cells. Research using Jurkat T cells demonstrated that this compound inhibits IL-2 proximal promoter-driven luciferase stimulated by PMA/ionomycin with an IC50 of 21.8 ± 4.4 nM. It also inhibited the activation of the endogenous IL-2 promoter in response to PMA and thapsigargin with an IC50 of 1.10 ± 0.26 µM. Furthermore, this compound inhibited human mixed lymphocyte reaction with an IC50 of 0.90 ± 0.17 µM, similar to its effect on endogenous IL-2 production in Jurkat T cells. researchgate.netnih.govplos.org The transcription activation of the IL-2 promoter is dependent on key transcription factors including NFAT, NF-κB, and AP-1. researchgate.netnih.gov this compound has been shown to inhibit the NFAT pathway in Jurkat T cells with an IC50 of 113 ± 30 nM. researchgate.netplos.org

In addition to inhibiting pro-inflammatory cytokines like IL-2, this compound has been observed to increase the levels of the interleukin-1 receptor antagonist (IL-1RA). mdpi.comresearchgate.net This increase in IL-1RA contributes to its anti-inflammatory properties. mdpi.comasm.org Studies in mice have shown dramatic increases in tissue inhibitor matrix metalloproteinase 1 (TIMP-1) and IL1-RA (538% and 346% increases, respectively) following this compound treatment, alongside a modest increase in TNF-alpha (83%) and several other pro- and anti-inflammatory cytokines. mdpi.com

Conversely, some studies suggest this compound treatment can enhance the levels of certain cytokines. In a study involving BCG revaccination in mice, this compound treatment significantly enhanced the levels of IL-2, TNF-α, IFN-γ, IL-12, and IL-6, while decreasing the levels of IL-10. nih.gov There was also a stable maintenance of IL-1β levels. nih.gov The enhancement in IL-2, TNF-α, and IFN-γ levels corroborated the finding that this compound treatment enhances the levels of polyfunctional memory T cells. nih.gov The increased level of IL-6 suggested that this compound treatment establishes a cytokine milieu that promotes Th17 cell generation. nih.gov

The modulation of cytokine production by this compound appears to be concentration and context-dependent, contributing to both its immunosuppressive and potentially immunostimulatory effects in different settings.

Here is a summary of this compound's effects on certain cytokines:

CytokineEffect of this compound TreatmentContextSource
IL-2Inhibition of production (Jurkat T cells, human MLR)In vitro researchgate.netnih.govplos.org
IL-2Enhanced levelsBCG revaccination in mice nih.gov
IL-1 Receptor AntagonistIncreased productionIn vivo (mice), contributes to anti-inflammation mdpi.comresearchgate.netasm.org
TNF-αModest increaseIn vivo (mice) mdpi.com
TNF-αEnhanced levelsBCG revaccination in mice nih.gov
IFN-γEnhanced levelsBCG revaccination in mice nih.gov
IL-12Enhanced levelsBCG revaccination in mice nih.gov
IL-6Increased levelsBCG revaccination in mice nih.gov
IL-10Decreased levelsBCG revaccination in mice nih.gov
IL-1βStable maintenanceBCG revaccination in mice nih.gov

Suppression of Pathogenic Th17 Cells

This compound has been shown to impact Th17 cells, a subset of T helper cells involved in inflammatory responses and implicated in autoimmune diseases and immune-related adverse events. When combined with immune checkpoint blockade (ICB), this compound decreased the numbers and pathogenicity of intestinal Th17 cells in an E2F-dependent manner. aacrjournals.orgresearchgate.nethoustonmethodist.org This suppression of pathogenic Th17 cells may contribute to the ability of this compound to reduce immune-related adverse events associated with dual ICB therapy. aacrjournals.orghoustonmethodist.org

However, it is worth noting that one study in mice suggested that this compound treatment, through increased IL-6 levels, might establish a cytokine milieu that promotes Th17 cell generation in the context of BCG revaccination. nih.gov This highlights the complex and context-dependent effects of this compound on different T cell subsets.

Modulation of Macrophage Activity and Apoptosis Induction

This compound significantly influences macrophage activity, including the induction of apoptosis. Studies have demonstrated that this compound exhibits apoptosis-inducing activity in macrophages. asm.orgresearchgate.netnih.gov When human monocyte-derived macrophages were cultured in vitro with this compound, they showed decreased metabolic activity, cell shrinkage, nuclear condensation, and fragmentation, all indicative of cell death. asm.orgnih.gov The endonuclease inhibitor ZnCl2 inhibited this this compound-induced cell death. asm.orgnih.gov

A significant enhancement of caspase-3 activity has been observed in this compound-treated macrophages and THP-1 cells, suggesting that this compound induces apoptosis via caspase-3 pathways in these cells. asm.orgresearchgate.netnih.gov This apoptosis-inducing activity in macrophages may also contribute to the antibacterial properties of this compound. asm.org

However, the effect of this compound on macrophage apoptosis can be influenced by its physical form. While the dissolved fraction of this compound was found to be cytotoxic and induced apoptosis in macrophages in vitro, in vivo, the formation of crystal-like drug inclusions (CLDIs) within macrophages did not induce macrophage apoptosis. oncotarget.com Instead, CLDIs altered immune signaling pathways downstream of Toll-like receptor (TLR) ligation, leading to decreased NF-κB activation and TNFα production and enhanced IL-1RA production. oncotarget.com This suggests that in vivo, macrophages may detoxify soluble this compound by sequestering it in an insoluble form, which contributes to the drug's anti-inflammatory activity rather than inducing apoptosis. oncotarget.com

Impact on Chromatin Accessibility and E2F1-TCF1 Pathway in T-cells

This compound has been shown to impact T-cells by altering chromatin accessibility and influencing the E2F1-TCF1 pathway. Mechanistically, this compound was found to alter chromatin accessibility in CD8+ T cells. aacrjournals.orgnih.gov This alteration leads to the expression of E2F/E2F1 target genes associated with early memory T-cell differentiation, including Tcf7. aacrjournals.orgnih.gov this compound treatment stimulated E2F1 binding to the Tcf7 promoter and boosted the CD8+ T-cell antitumor response. aacrjournals.org Repressing E2F1 signaling through overexpression of constitutively active aryl hydrocarbon receptor or knockout of E2f1 or Tcf7 decreased tumor cell killing by this compound. aacrjournals.org

The enhancement of E2F1 transcriptional activity by this compound induces Tcf7 promoter activation and increases Tcf1 expression. researchgate.net This amplification of the E2F1-TCF1 pathway in CD8+ T cells contributes to the tumor-inhibiting potency of cytotoxic T lymphocytes. researchgate.net Furthermore, this mechanism is also linked to the reduction of pathogenic Th17 differentiation, which helps to attenuate immune-related adverse events. researchgate.nethoustonmethodist.org

Changes in chromatin accessibility, including the opening of chromatin around the Tcf7 locus and closing of the Pdcd1 locus, were observed in tumor-infiltrating CD8+ T cells following this compound treatment. nih.gov Gene set enrichment analysis (GSEA) also indicated that this compound combined with ICB skewed tumor-specific T cell differentiation toward early memory T cell development. nih.gov

Anti-Cancer Mechanisms

Beyond its immunomodulatory effects, this compound also possesses direct anti-cancer properties mediated through several mechanisms, including the inhibition of the Wnt signaling pathway and the induction of apoptosis via caspase-3 pathways.

Inhibition of the Wnt Signaling Pathway

This compound has been identified as a specific inhibitor of the canonical Wnt signaling pathway. unil.chnih.govunil.chasm.orgresearchgate.netmdpi.com This pathway is frequently overactivated in various cancers and plays a crucial role in oncogenic transformation and progression. nih.govmdpi.com

Studies have shown that this compound inhibits canonical Wnt signaling in a panel of triple-negative breast cancer (TNBC) cells in vitro. unil.chunil.ch It suppresses the canonical Wnt pathway, both endogenous and exogenously induced, as measured by the expression of Axin2, c-Myc, and TopFlash reporter genes/constructs, as well as by monitoring cytoplasmic β-catenin levels. unil.ch this compound has also been shown to inhibit Wnt signaling in other cancer types, including hepatocellular carcinoma (HCC), colorectal cancer (CRC), and ovarian cancer cell lines in a dose-dependent manner. nih.govresearchgate.net The efficacy of this compound against a given cancer type can correlate with the basal levels of Wnt pathway activation and the drug's ability to inhibit Wnt signaling in that cancer. nih.gov

In vivo studies using mouse xenograft models of TNBC have shown that this compound efficiently suppresses tumor growth, correlating with in vivo inhibition of the Wnt pathway in the tumors. unil.chnih.govjapsonline.comresearchgate.net This inhibition involves blocking β-catenin accumulation in the cytoplasm of tumor cells, effectively switching the Wnt pathway from an "on" to an "off" state. unil.ch Additionally, a reduction in the Wnt target gene MDR-1 has been observed upon this compound treatment. unil.ch

This compound targets the Wnt pathway downstream of β-catenin and can inhibit the proliferation of TNBC cells. mdpi.com Its anti-Wnt effect has been observed with an IC50 in the low-µM range (~3 µM). mdpi.com

Induction of Apoptosis via Caspase-3 Pathways

This compound induces apoptosis in various cancer cell lines, and this process often involves the activation of caspase-3. Studies have shown that this compound treatment leads to increased caspase-3 activity in macrophages and THP-1 cells, indicative of apoptosis induction. asm.orgresearchgate.netnih.gov

In the context of cancer, this compound has been shown to induce apoptosis in chronic myeloid leukemia (CML) cells. haematologica.orgresearchgate.net this compound induced cytochrome C release and activated caspase-3 and caspase-9, but not caspase-8, suggesting mitochondria-mediated apoptosis. haematologica.orgresearchgate.net This was consistent with decreased B-cell lymphoma 2 (BCL-2) and increased BAX expression. haematologica.orgresearchgate.net

This compound also induces apoptosis in pancreatic ductal adenocarcinoma (PDAC) cell lines. oncotarget.comnih.gov Evidence suggests that this compound induces apoptosis in PDAC cells with an EC50 in the µM range, potentially via its inhibitory action on the potassium channel Kv1.3. oncotarget.comnih.gov Inhibition of mitochondrial Kv1.3 (mtKv1.3) increases mitochondrial ROS production, which appears necessary for triggering programmed cell death. oncotarget.com

Furthermore, this compound treatment has been shown to induce cytotoxicity and caspase-dependent apoptosis in prostate cancer cell lines. medrxiv.org Mechanistic assays in multiple myeloma cell lines treated with this compound revealed mitochondrial membrane depolarization, changes in cell membrane asymmetry, and increased caspase-3 activity, indicating an intrinsic apoptosis mechanism. researchgate.netnih.gov

The induction of apoptosis via caspase-3 pathways is a key mechanism by which this compound exerts its anti-cancer effects across different cancer types.

Mitochondrial Membrane Depolarization

Studies have indicated that this compound can induce mitochondrial membrane depolarization. In prostate cancer cell lines, this compound treatment has been shown to result in mitochondrial membrane depolarization. medrxiv.orgmedrxiv.org This effect has also been observed in macrophages treated with soluble this compound, where it correlated with decreased mitochondrial staining and morphological signs of apoptosis. nih.gov Furthermore, in chronic myeloid leukemia (CML) cells, this compound induced mitochondrial membrane depolarization, alongside increased reactive oxygen species (ROS) production. nih.gov Changes in mitochondrial membrane permeability, such as those leading to altered staining patterns, are considered upstream events in the activation of apoptosis pathways. nih.gov

Enhancement of CD8+ T-cell Cytotoxic Activity

Research suggests that this compound can enhance the cytotoxic activity of CD8+ T cells. This enhancement has been observed in the context of cancer immunotherapy. This compound has been shown to activate the E2F1 pathway in CD8+ T cells, which may improve the ability of these "killer cells" to recognize and respond to tumors. houstonmethodist.org Mechanistic studies using single-cell RNA sequencing and other techniques have indicated that a combination of this compound and dual immune checkpoint blockade induced a transcriptional signature in tumor-infiltrating CD8+ T cells characterized by cytotoxic and early-memory features, with upregulation of genes like Tcf7, Lef1, Gzmb, and Ifng, and downregulation of exhaustion markers. williamscancerinstitute.com This suggests that this compound helps immune cells maintain their ability to effectively respond to cancer over time. williamscancerinstitute.com

Modulation of Tumor Microenvironment (e.g., M1-like Macrophages, Myeloid-Derived Suppressor Cells)

This compound has demonstrated the ability to modulate the tumor microenvironment (TME), influencing the behavior of immune cells within it. Studies have shown that this compound can increase the percentage of M1-like macrophages and monocytic myeloid-derived suppressor cells (MDSCs) in the TME. nih.gov M1 macrophages are generally associated with immunostimulatory and antitumor functions, releasing cytokines and chemokines that can directly kill tumor cells and augment the activity of T cells. thno.org Conversely, MDSCs are a heterogeneous population of immature immune cells known for their potent immunosuppressive effects on T cell proliferation and activity, contributing to tumor growth and T cell dysfunction. frontiersin.org In glioblastoma models, this compound modulated the TME by increasing the infiltration of cytotoxic CD8+ T cells and altering macrophage polarization towards a pro-inflammatory M1 phenotype, while also reducing regulatory T cells (Tregs). nih.govresearchgate.net Tregs are another type of immunosuppressive cell found in the TME that can limit anti-tumor immune responses. nih.gov

Impact on Cancer Cell Growth and Survival in Specific Cell Lines

This compound has shown an impact on the growth and survival of various cancer cell lines. Pre-clinical tests have indicated that this compound can reduce cancer cell growth and survival in some cancer cell lines, including those from colorectal, liver, ovarian, and brain tumors. unige.ch Its effects appeared to be more pronounced in cell lines where the Wnt signaling pathway was more strongly overactivated. unige.ch In triple-negative breast cancer (TNBC) cell lines, this compound suppressed cell proliferation and clonogenicity, inducing apoptosis and cell cycle arrest. unil.ch In pancreatic ductal adenocarcinoma (PDAC) cell lines harboring p53 mutations, this compound efficiently killed cells in vitro with an EC50 in the µM range, providing evidence that it induces apoptosis. nih.govresearchgate.net Studies in prostate cancer cell lines have also shown that this compound induces cytotoxicity and caspase-dependent apoptosis. medrxiv.orgmedrxiv.org

Below is a table summarizing some of the observed effects of this compound on cancer cell lines:

Cancer TypeObserved Effect on Growth/SurvivalProposed Mechanism / Associated FactorRelevant Citation
Colorectal CancerDecreased cell growth and survivalWnt signaling overactivation unige.ch
Liver CancerDecreased cell growth and survivalWnt signaling overactivation unige.ch
Ovarian CancerDecreased cell growth and survivalWnt signaling overactivation unige.ch
Brain Tumors (Glioblastoma)Decreased cell growth and survivalWnt signaling overactivation unige.ch
Triple-Negative Breast CancerSuppressed proliferation, induced apoptosis and cell cycle arrestCanonical Wnt signaling inhibition unil.ch
Pancreatic Ductal AdenocarcinomaEfficient cell killing, induced apoptosisSpecific inhibitory action on Kv1.3 potassium channel nih.govresearchgate.net
Prostate CancerCytotoxicity, caspase-dependent apoptosis medrxiv.orgmedrxiv.org

Mechanisms in Neurodegenerative Diseases

Recent research has explored the potential of this compound in the context of neurodegenerative diseases, particularly those characterized by the accumulation of polyglutamine (polyQ) proteins.

Reduction of PolyQ Protein Toxicity

Studies suggest that this compound can reduce the toxicity associated with polyQ proteins, which are found in patients with certain hereditary neurodegenerative diseases like Huntington's disease. ki.sescilifelab.se A high-throughput chemical screen identified this compound as a compound that lowers the toxicity of a protein containing an expanded polyQ repeat in in vitro and in vivo models, including zebrafish and neuron-specific worm models of polyQ disease. nih.govnih.govcore.ac.ukcsic.essemmelweis.huresearchgate.net

Restoration of Mitochondrial Function

This compound's beneficial effects in polyQ diseases appear to be linked to the restoration of mitochondrial function. ki.sescilifelab.se Computational analyses have indicated that this compound's effect in reducing polyQ toxicity is due to the stimulation of mitochondrial biogenesis, a process mediated by peroxisome proliferator-activated receptor gamma (PPARγ). nih.govnih.govcore.ac.ukcsic.essemmelweis.huresearchgate.net In agreement with these findings, this compound was shown to rescue mitochondrial dysfunction triggered by the expression of a polyQ-expanded protein. nih.govnih.govcore.ac.ukcsic.essemmelweis.huresearchgate.net This supports the hypothesis that polyQ diseases are associated with mitochondrial dysfunction and that stimulating mitochondrial biogenesis could be a therapeutic strategy. ki.senih.govcsic.es

Pharmacokinetics and Metabolism of Clofazimine

Absorption and Distribution Dynamics

Following oral administration, the absorption of clofazimine is variable and incomplete, ranging from approximately 45% to 70%. drugbank.commims.commims.com The presence of food significantly impacts this compound absorption, generally increasing the peak plasma concentration (Cmax) and reducing the time to reach Cmax (Tmax). drugbank.commims.commims.comnih.govtandfonline.com For instance, co-administration with food resulted in a Cmax of 0.41 mg/L with a Tmax of 8 hours, compared to a 30% lower Cmax and a Tmax of 12 hours in a fasting state. drugbank.com Administration with a high-fat meal has been shown to increase bioavailability by approximately 145% compared to fasting administration, although significant inter- and intra-subject variability exists. nih.gov Orange juice and antacids, conversely, have been reported to reduce the mean bioavailability. nih.gov

Due to its high lipophilicity, this compound is extensively distributed throughout the body, primarily depositing in fatty tissues and cells of the reticuloendothelial system, such as macrophages. drugbank.comasm.orgoup.commims.commims.cominchem.org This widespread distribution leads to a large apparent volume of distribution, estimated to be around 1470 L in one study and 2,960 L in another. asm.orgnih.gov this compound accumulates to high concentrations in organs rich in reticuloendothelial tissue and fat, including mesenteric lymph nodes, adipose tissue, adrenals, liver, lungs, gallbladder, bile, and spleen. asm.orginchem.org Within many tissues, this compound can be found in crystalline form, potentially contributing to its prolonged retention in the body. asm.orgtandfonline.com While it distributes widely, this compound does not cross the blood-brain barrier but does cross the placenta and is found in breast milk. nih.govmims.commims.com Studies in mice have shown a significant redistribution of this compound from adipose tissue to the liver and spleen during chronic administration, with substantial accumulation in resident macrophages. asm.org

Hepatic Metabolism and Metabolite Identification

This compound undergoes metabolism in the liver. frontiersin.orgasm.orgresearchgate.net Studies using human liver microsomes have identified at least eight metabolites, including four oxidative metabolites, three glucuronide conjugates, and one sulfate conjugate. asm.orgresearchgate.netnih.gov The structures of these metabolites have been deduced based on tandem mass spectrometry. asm.orgresearchgate.netnih.gov Some metabolites, such as hydroxylated and hydrated this compound, can be generated via nonenzymatic pathways. asm.orgresearchgate.netnih.gov While three urinary metabolites have been identified in humans, their biological activity remains unknown. nih.govtandfonline.com

Role of Cytochrome P450 Isoenzymes (e.g., CYP1A2, CYP3A4/A5)

Cytochrome P450 (CYP) isoenzymes play a role in the oxidative metabolism of this compound. Specifically, CYP1A2 is primarily involved in the formation of hydrolytic-dehalogenated this compound, while CYP3A4/A5 are responsible for the formation of hydrolytic-deaminated this compound. asm.orgresearchgate.netnih.gov CYP1A2 and CYP3A enzymes are broadly involved in the formation of oxidative metabolites. asm.orgresearchgate.netnih.gov In vitro studies have indicated that this compound can act as a weak inducer of CYP3A4 at low concentrations but inhibits CYP3A4 at therapeutic concentrations, suggesting potential for auto-induction and clinically significant interactions with drugs metabolized by CYP3A4. frontiersin.orgresearchgate.netresearchgate.net However, some clinical studies have not found a significant impact of this compound on the clearance of CYP3A4 substrates like bedaquiline. frontiersin.org

Glucuronidation and Sulfate Conjugation

Conjugation reactions, specifically glucuronidation and sulfate conjugation, are also involved in this compound metabolism. wikipedia.orgasm.orgresearchgate.netnih.gov Glucuronide conjugates are formed from oxidative metabolites. asm.orgresearchgate.netnih.gov UDP-glucuronosyltransferases (UGTs) involved in the glucuronidation of hydroxylated and hydrated this compound glucuronide include UGT1A1, UGT1A3, and UGT1A9. asm.orgresearchgate.netnih.gov Hydrolytic-deaminated this compound glucuronide is catalyzed by UGT1A4, UGT1A9, UGT1A3, and UGT2B4. asm.orgresearchgate.netnih.gov

Elimination Pathways

The elimination of this compound is notably slow. asm.orgnih.gov A substantial portion of the unchanged drug is excreted in the feces, which may involve biliary excretion. drugbank.comfrontiersin.orgnih.govmims.commims.comtandfonline.com A small amount is also eliminated in sputum, sebum, and sweat. drugbank.commims.commims.com Excretion of unchanged drug and metabolites in a 24-hour urine collection is negligible, accounting for approximately 1% of the dose. drugbank.comfrontiersin.orgmims.commims.com Renal excretion plays a minor role in this compound elimination. hiv-druginteractions.org

Half-Life Considerations

This compound is characterized by a very long elimination half-life, which is variable. nih.govoup.com Reported values for the mean elimination half-life range from approximately 25 days to as long as 70 days. drugbank.comwikipedia.orgnih.govmims.commims.com One study in healthy volunteers reported a mean terminal half-life of 10.6 days after a single dose and around 10.5 days from a fitted multiple-dose profile. nih.gov In patients with pulmonary non-tuberculous mycobacterial infection, the estimated half-life was 36 days. asm.org The prolonged half-life contributes to the drug's accumulation in tissues and the time required to reach steady-state concentrations, which is estimated to be around 70 days with a 50 mg daily dose. tandfonline.com

Pharmacokinetic Interactions

This compound has the potential for pharmacokinetic interactions with other drugs. It may increase the serum concentrations of drugs that are substrates of CYP3A4/5. mims.commims.com While this compound can inhibit CYP3A4 in vitro, clinical studies regarding its interaction with CYP3A4 substrates like bedaquiline have yielded mixed results. frontiersin.orgresearchgate.netresearchgate.net Co-administration with rifampicin, a strong CYP3A4 inducer, does not appear to induce this compound metabolism or affect its tissue concentrations, although rifampicin can reduce this compound exposure by 22%. asm.orgfrontiersin.orgjosorge.com Co-administration with isoniazid has been shown to increase plasma and lung concentrations of this compound but reduce concentrations in other tissues. frontiersin.org this compound may decrease the excretion rate of certain drugs, including cerivastatin, conjugated estrogens, celecoxib, cladribine, and clofarabine, potentially leading to higher serum levels. drugbank.com It may also decrease the metabolism of drugs like cephalexin, atorvastatin, albendazole, clarithromycin, clindamycin, and alprazolam. drugbank.com this compound can increase the serum concentration of various drugs, including abemaciclib, acalabrutinib, acenocoumarol, afatinib, alectinib, ambrisentan, aminophylline, amiodarone, avanafil, axitinib, carbamazepine, carfilzomib, colchicine, conivaptan, copanlisib, crizotinib, and clobazam. drugbank.com Additionally, there is an increased risk of QTc prolongation when this compound is combined with other agents known to prolong the QT interval. drugbank.comasm.orgmims.commims.com

Drug-Drug Interactions (DDIs) with Other Antimycobacterial Agents

Studies have investigated the potential for pharmacokinetic interactions between this compound and other antimycobacterial agents used in the treatment of leprosy and tuberculosis. While this compound is often used in combination regimens to prevent resistance and enhance efficacy, understanding these interactions is crucial. drugbank.commdpi.com

In the context of leprosy, this compound has been used in combination with dapsone and rifampicin. mdpi.com Some evidence suggests that this compound, when combined with rifampicin alone or with dapsone, can delay the time to reach peak serum rifampicin concentration and decrease its absorption rate. inchem.org There is no evidence of interference between this compound and dapsone regarding their antimycobacterial activity, although in vitro studies showed opposite effects on neutrophil motility and lymphocyte transformation, potentially decreasing or nullifying the anti-inflammatory effects of dapsone. inchem.org

For drug-resistant tuberculosis, this compound is a key component of treatment regimens. oup.comfrontiersin.org A secondary analysis of an observational study assessed the interaction between this compound and bedaquiline, another crucial DR-TB drug. This study found no significant pharmacokinetic interaction between this compound and bedaquiline, indicating that their combination is safe in terms of pharmacokinetics for treating MDR-TB. mdpi.comhivglasgow.org this compound did not significantly impact the bioavailability of bedaquiline or its metabolite M2. mdpi.comhivglasgow.org

Research has also explored interactions between this compound and other agents frequently used for DR-TB, including isoniazid, linezolid, levofloxacin, and cycloserine (dosed as terizidone). asm.orgresearchgate.net One study found that the addition of this compound to a DR-TB regimen resulted in a statistically significant 15% reduction in levofloxacin clearance, leading to a 19% increase in levofloxacin AUC. asm.orgresearchgate.net While the precise mechanism for this interaction is not fully elucidated, in vitro studies suggest this compound may inhibit P-glycoprotein and BCRP, which are involved in the renal tubular secretion of levofloxacin. asm.org No significant effect on the pharmacokinetics of high-dose isoniazid, linezolid, or cycloserine was observed in this study. asm.orgresearchgate.net

This compound's potential to inhibit certain cytochrome enzymes, particularly CYP3A4/A5, has been noted in in vitro studies. frontiersin.orgnih.govresearchgate.net This could lead to potential pharmacokinetic drug-drug interactions with co-administered drugs metabolized by these enzymes. frontiersin.orgresearchgate.net While one study did not find a significant difference in the clearance of bedaquiline (a CYP3A4 substrate) or its metabolite when co-administered with this compound, this compound was predicted to be a moderate to strong inhibitor of CYP3A4/5 and a weak inhibitor of CYP2C8 and CYP2D6 based on static and PBPK modeling. frontiersin.orgresearchgate.net

Interaction with Efflux Pumps (e.g., P-glycoprotein, BCRP)

In vitro studies have indicated that this compound interacts with several membrane transporters, including efflux pumps like P-glycoprotein (P-gp) and Breast Cancer Resistance Protein (BCRP), as well as uptake transporters such as Organic Anion Transporter 1 (OAT1) and Organic Anion Transporter 3 (OAT3). asm.orgnih.govresearchgate.netnih.gov

This compound has been identified as a substrate of P-gp and BCRP. asm.orgnih.govresearchgate.netnih.gov In vitro experiments using cell lines overexpressing these transporters have demonstrated that this compound is effluxed by both P-gp and BCRP. asm.orgnih.govresearchgate.netnih.gov The presence of selective inhibitors of P-gp (e.g., verapamil, cyclosporine-A, PSC-833, quinidine) and BCRP (e.g., Ko143, daunorubicin) significantly increased the intracellular accumulation of this compound. asm.orgresearchgate.netnih.govresearchgate.netnih.gov Bidirectional transport assays showed mean efflux ratios for this compound of 4.17 ± 0.63 in P-gp overexpressing cells and 3.37 ± 1.2 in BCRP overexpressing cells. asm.orgresearchgate.netnih.govresearchgate.netnih.gov Kinetic studies estimated the Km and Vmax values for this compound transport by P-gp and BCRP. asm.orgresearchgate.netnih.govresearchgate.netnih.gov

These interactions suggest that P-gp and BCRP play a role in the disposition of this compound. asm.orgnih.gov As these transporters are expressed in the apical membrane of intestinal cells, they may influence the absorption of this compound. nih.gov Their presence at the blood-brain barrier may also contribute to the low concentrations of this compound observed in the brain. asm.orgnih.gov Furthermore, the inhibition of P-gp and BCRP by this compound, as suggested by in vitro research, could lead to drug-drug interactions with co-administered medications that are substrates for these transporters. mdpi.comasm.orgnih.gov For instance, the observed reduction in levofloxacin clearance when co-administered with this compound may be related to this compound's potential inhibition of P-gp and BCRP in the kidneys, affecting levofloxacin's tubular secretion. asm.org

The interaction of this compound with efflux pumps highlights the complexity of its pharmacokinetics and the potential for transporter-mediated drug-drug interactions, particularly in multi-drug regimens used for conditions like tuberculosis. asm.orgnih.gov

Data Tables

Pharmacokinetic ParameterValue (Approximate)Source(s)
Oral Absorption (%)45-62 drugbank.comnih.govmims.com
Protein Binding (%)>99 asm.orgnih.govasm.org
Elimination Half-life (days)10.5 - 70 drugbank.comasm.orgnih.govasm.orgnih.gov
Urinary Excretion (unchanged) (%)0.03 - 0.41 (24h) asm.orgnih.gov
Transporter InteractionRoleIn vitro Finding(s)Source(s)
P-glycoprotein (P-gp)SubstrateEffluxed by P-gp; Intracellular concentration increased by P-gp inhibitors. Efflux ratio: 4.17 ± 0.63. asm.orgresearchgate.netnih.govresearchgate.netnih.gov
BCRPSubstrateEffluxed by BCRP; Intracellular concentration increased by BCRP inhibitors. Efflux ratio: 3.37 ± 1.2. asm.orgresearchgate.netnih.govresearchgate.netnih.gov
OAT1SubstrateUptake increased in OAT1 overexpressing cells. asm.orgnih.govresearchgate.netnih.gov
OAT3SubstrateUptake increased in OAT3 overexpressing cells. asm.orgnih.govresearchgate.netnih.gov

Drug Resistance and Susceptibility

Mechanisms of Resistance in Mycobacterium tuberculosis

Resistance to clofazimine in M. tuberculosis is a complex phenomenon, often involving mutations in specific genes that lead to reduced intracellular drug accumulation or altered cellular processes targeted by the drug frontiersin.orgnih.gov.

Mutations in Rv0678 Gene and Upregulation of Efflux Pumps (e.g., MmpL5, MmpS5)

A prominent mechanism of this compound resistance in M. tuberculosis involves mutations in the Rv0678 gene frontiersin.orgasm.orgfrontiersin.org. Rv0678 encodes a transcriptional repressor that regulates the expression of the mmpS5-mmpL5 operon, which codes for the MmpS5-MmpL5 efflux pump frontiersin.orgbiorxiv.orgplos.org. Mutations or insertions in Rv0678 can lead to impaired repressor function, resulting in the upregulation of the MmpS5-MmpL5 efflux pump frontiersin.orgplos.orgresearchgate.net. This increased expression of the efflux pump facilitates the active extrusion of this compound from the bacterial cell, thereby reducing its intracellular concentration and conferring resistance plos.orgresearchgate.netnih.gov. Studies have documented that mutations in Rv0678 can lead to a 2- to 4-fold increase in the minimum inhibitory concentration (MIC) of this compound in murine isolates and a 2- to 16-fold increase in bedaquiline MIC in clinical isolates frontiersin.org. A significant proportion of genomic variants causing elevated this compound and/or bedaquiline MICs affect the transcriptional repressor Rv0678 biorxiv.org. Structural modeling of Rv0678 suggests that resistance can arise from mechanisms such as impairment of DNA binding, reduction in protein stability, disruption of protein dimerization, and alteration in affinity for its fatty acid ligand biorxiv.org.

Impact on Membrane Potential and Potassium Uptake

This compound is known to interact with bacterial membrane phospholipids, potentially leading to membrane dysfunction frontiersin.orgnih.gov. One proposed mechanism of action involves the almost complete inhibition of potassium uptake by this compound through lysophosphatidic-mediated membrane dysfunction nih.govresearchgate.net. This interference with membrane potential can reduce ATP levels in M. tuberculosis nih.gov. While this is primarily described as a mechanism of drug action, alterations in membrane potential or potassium uptake systems could potentially contribute to resistance, although specific resistance mechanisms directly linked to these effects are less characterized compared to efflux pump mechanisms. Studies have investigated the effects of this compound on potassium uptake by M. tuberculosis, including Trk-deletion mutants, showing inhibition of rubidium-86 uptake researchgate.net. This compound has also demonstrated inhibitory effects on the activity of Na+,K+-ATPase in rat cardiomyocytes, highlighting its impact on ion transporters mdpi.com.

Cross-Resistance with Other Antimycobacterial Drugs (e.g., Bedaquiline)

A significant concern regarding this compound resistance is the observed cross-resistance with bedaquiline, another crucial drug for treating drug-resistant TB frontiersin.orgnih.gov. This cross-resistance is primarily mediated by mutations in the Rv0678 gene, which lead to the upregulation of the MmpS5-MmpL5 efflux pump, capable of extruding both drugs plos.orgresearchgate.netnih.gov. Cross-resistance between this compound and bedaquiline due to mutations in Rv0678, Rv1979c, and pepQ genes has been reported frontiersin.orgnih.gov. The emergence of such cross-resistance can limit treatment options for patients with multidrug-resistant and extensively drug-resistant TB frontiersin.orgnih.gov. Studies have shown that a high percentage of this compound-resistant isolates are also resistant to bedaquiline, particularly when the this compound MIC is elevated frontiersin.org. Cross-resistance between bedaquiline and this compound was reported in a certain percentage of MDR-TB and pre-XDR-TB/XDR-TB populations in a surveillance study shea-online.org.

Resistance Mechanisms in Other Pathogens

While this compound is primarily known for its activity against mycobacteria, particularly M. leprae and M. tuberculosis, resistance mechanisms have also been explored in other mycobacterial species and, to a lesser extent, other pathogens. This compound has demonstrated activity against various mycobacterial species, including rapid-growing ones like Mycobacterium abscessus and Mycobacterium fortuitum, and slow-growing ones like Mycobacterium avium complex (MAC) oup.com. In M. avium complex and M. abscessus, in vitro studies suggest this compound can prevent macrolide resistance oup.com. A mechanism of this compound resistance common to multiple mycobacterial species involves the regulator of the MmpS5/L5 mycobactin transport proteins, annotated as MmpR5 in M. tuberculosis and MmpT5 in M. intracellulare researchgate.net. Studies in M. intracellulare have established that mutations leading to higher expression of the mmpS5/L5 genes resulted in increased this compound resistance researchgate.net. This compound is generally active against diverse Gram-positive organisms, while Gram-negative bacteria are uniformly resistant researchgate.net. The mechanisms underlying this inherent resistance in Gram-negative bacteria are not fully characterized but may involve differences in cell envelope structure and efflux systems. Research is also exploring the potential of this compound in treating drug-resistant forms of certain cancers, such as chronic myeloid leukemia and multiple myeloma, suggesting potential interactions with cellular pathways beyond antimicrobial effects medrxiv.org.

In Vitro and In Vivo Resistance Studies

Numerous studies have investigated this compound resistance through both in vitro and in vivo approaches frontiersin.orgasm.orgasm.org. In vitro studies, such as those using resazurin reduction microplate assay (REMA) or microplate alamar blue assay (MABA), are used to determine the minimum inhibitory concentrations (MICs) of this compound against bacterial isolates and to select for resistant mutants nih.govresearchgate.netasm.org. Serial passage on increasing concentrations of this compound has been used to induce resistance in M. tuberculosis strains in vitro bohrium.com. Whole-genome sequencing of in vitro selected resistant mutants and clinical isolates has been instrumental in identifying genetic mutations associated with resistance, particularly in genes like Rv0678, pepQ, and Rv1979c asm.orgbohrium.comasm.orgmdpi.com.

In vivo studies, often utilizing mouse models of tuberculosis, are crucial for evaluating the efficacy of this compound and the impact of resistance mutations in a more complex biological setting plos.org. These studies can assess the effect of resistance-conferring mutations on bacterial load reduction and treatment outcomes plos.org. For instance, studies in mice have shown that mutations in pepQ associated with low-level resistance to this compound and bedaquiline reduced the efficacy of both drugs in vivo oup.com. Animal models have also been used to assess the bactericidal and sterilizing activity of this compound-containing regimens. Clinical surveillance studies complement in vitro and in vivo findings by monitoring the emergence and prevalence of this compound resistance in patient isolates and correlating genotypic findings with treatment outcomes shea-online.orgmdpi.com. These studies provide valuable data on the real-world impact of resistance mechanisms.

Below is a table summarizing some research findings on this compound resistance mutations in M. tuberculosis:

GeneAssociated MechanismImpact on MIC (fold increase)NotesReferences
Rv0678Upregulation of MmpS5-MmpL5 efflux2-4x (murine), 2-16x (clinical BDQ)Primary mechanism, cross-resistance with bedaquiline frontiersin.orgfrontiersin.orgplos.orgnih.gov
pepQUnclear (putative aminopeptidase)Low-level (up to 4x BDQ)Associated with cross-resistance to bedaquiline in mice asm.orgfrontiersin.orgoup.com
Rv1979cUnclearNot specifiedAssociation with resistance reported, but significance unclear asm.orgoup.com
atpETarget of BedaquilineHigh-level BDQNot directly involved in CFZ resistance, but relevant for cross-resistance context frontiersin.orgasm.org
Rv1453Intergenic region mutationNot specifiedAssociated with CFZ resistance in clinical isolates nih.govasm.org

Table 1: Summary of Selected this compound Resistance Associated Genes in M. tuberculosis

Drug Susceptibility Testing (DST) Methodologies

Drug Susceptibility Testing (DST) for this compound is crucial for guiding treatment decisions, particularly in the context of drug-resistant tuberculosis (DR-TB) and infections caused by nontuberculous mycobacteria (NTM). While this compound has been used for many years, the standardization of DST methods and the establishment of definitive breakpoints have been ongoing efforts.

Various phenotypic methods are employed for this compound DST, including solid media methods like the agar proportion method and liquid media methods such as the Mycobacterial Growth Indicator Tube (MGIT) system and microbroth dilution assays. Historically, solid media like Löwenstein–Jensen, Middlebrook 7H10, or Middlebrook 7H11 agar were used for DST, including for Mycobacterium tuberculosis (Mtb) ersnet.org. More recently, liquid media systems like MGIT have become prevalent in quality-assured laboratories ersnet.org.

Broth microdilution methods, such as the resazurin microtiter assay (REMA) and the microplate alamar blue assay (MABA), are also utilized to determine the minimum inhibitory concentration (MIC) of this compound against mycobacterial strains mdpi.combiorxiv.orgnih.gov. These methods are considered relatively inexpensive, rapid, and simple to perform mdpi.com. Studies have compared the agreement between different methods, finding varying levels of concordance depending on the drug and the specific mycobacterial species being tested oup.comnih.gov. For instance, one study evaluating Mycobacterium avium subsp. paratuberculosis found 90%–100% agreement at ±1 log2 dilution between MGIT and agar dilution methods for this compound MICs oup.comnih.gov.

The determination of critical concentrations (CCs) or breakpoints for this compound susceptibility testing has been a subject of research to standardize the interpretation of results. A breakpoint concentration of 1 mg/L for this compound susceptibility testing using the MGIT 960 method has been proposed based on studies evaluating multidrug-resistant clinical isolates mdpi.comup.ac.za. Another study recommended a CC of 1 µg/ml and suggested additional testing at 0.5 µg/ml to define an intermediate category, based on a comprehensive study to establish a CC for routine phenotypic DST of this compound using the MGIT 960 system up.ac.za.

MIC distributions for this compound can vary depending on the mycobacterial species and the method used. For M. tuberculosis, typical MIC ranges have been reported between 0.125 and 2.0 mg/L for various strains, including MDR-TB isolates frontiersin.org. Studies on NTM species have shown diverse activity, with varying MIC distributions among different species mdpi.comnih.gov. For example, Mycobacterium kansasii has shown lower this compound MIC values compared to Mycobacterium abscessus mdpi.comnih.gov. Tentative epidemiological cutoff (ECOFF) values have been defined for certain NTM species, such as M. kansasii (0.5 µg/ml), Mycobacterium avium (1 µg/ml), and Mycobacterium intracellulare (2 µg/ml) nih.gov.

Challenges in this compound DST include the need for standardized procedures and the establishment of universally accepted breakpoints, particularly for NTM where breakpoints are often not yet determined mdpi.comasm.org. Factors such as incubation time and growth media can influence MIC values nih.gov. Despite these challenges, DST for this compound is recommended, especially for patients with drug-resistant TB, to guide therapeutic decisions ersnet.orgwho.int.

Here is a summary of some research findings on this compound MICs and proposed breakpoints:

Mycobacterial SpeciesMethodMIC Range (mg/L)Proposed Breakpoint (mg/L)Source
M. tuberculosis (MDR-TB)Various0.125 - 2.00.25 - 1 frontiersin.org
M. tuberculosisMGIT 960-1 mdpi.comup.ac.za
M. tuberculosisMGIT 9600.125 - 11 (0.5 for intermediate) up.ac.za
M. abscessusBroth Micro.> 8Not determined mdpi.com
M. abscessusBroth Micro.0.12 - 4 (MIC50), 0.25 - 32 (MIC90)Not defined asm.org
M. kansasiiVarious≤ 0.062 - 0.125 (MIC50/MIC90)Tentative ECOFF: 0.5 mdpi.comnih.gov
M. aviumVarious-Tentative ECOFF: 1 nih.gov
M. intracellulareVarious-Tentative ECOFF: 2 nih.gov

Preclinical and Clinical Research Applications

Research in Mycobacterial Infections

Multidrug-Resistant Tuberculosis (MDR-TB) and Extensively Drug-Resistant Tuberculosis (XDR-TB)

Clofazimine has demonstrated activity against Mycobacterium tuberculosis, including multidrug-resistant strains, in in vitro studies. ersnet.org Its repurposing for drug-resistant tuberculosis (DR-TB) is supported by evidence of potent activity against DR-TB strains in vitro and in mice, and a reported treatment-shortening effect in DR-TB patients as part of multidrug regimens. frontiersin.org

Clinical experience with this compound in tuberculosis has been reported. A large cohort study from Bangladesh described a standardized treatment regimen including this compound as being highly effective against MDR-TB. nih.govmdpi.com In this study involving 515 MDR-TB patients who received a this compound-containing regimen for a minimum of 9 months, 84.5% (435/515) had successful treatment outcomes. mdpi.com 93% of patients achieved culture conversion at month 2 of treatment, and 84.4% had a bacteriologically favorable outcome. mdpi.com Furthermore, 82.3% of patients did not relapse for 24 months after treatment completion. mdpi.com

A study involving 32 consecutive patients with MDR-TB treated with this compound-containing regimens reported a culture conversion rate of 53.1% (17/32). ersnet.org The treatment success rate was 48.4% (15/31). ersnet.org Factors associated with treatment success included male gender and concurrent use of linezolid. ersnet.org

This compound has been re-classified by the WHO from a Group 5 agent (drugs with unclear significance) to a Group B agent (drugs with second highest priority for use) for use in individualized DR-TB regimens, solidifying its role as a key drug in DR-TB therapy. frontiersin.org

Data Table: this compound in MDR-TB and XDR-TB Treatment Outcomes

Study/SourcePatient PopulationRegimen TypeOutcome MeasureResult (%)95% Confidence IntervalNotes
Bangladesh Cohort Study (2010) nih.govmdpi.comMDR-TB (n=515)Standardized CFZ-cont.Successful Treatment84.5N/ATreatment duration >= 9 months
Bangladesh Cohort Study (2010) mdpi.comMDR-TB (n=515)Standardized CFZ-cont.Culture Conversion (Month 2)93.0N/A
Bangladesh Cohort Study (2010) mdpi.comMDR-TB (n=515)Standardized CFZ-cont.Bacteriologically Favorable Outcome84.4N/A
Bangladesh Cohort Study (2010) mdpi.comMDR-TB (n=415)Standardized CFZ-cont.No Relapse (>= 24 months post-treatment)82.3N/A
Systematic Review (through Feb 2012) nih.govMDR-TB and XDR-TBCFZ-containingFavorable Outcomes65.054–76Cure or treatment completion
Systematic Review (through Feb 2012) nih.govMDR-TBCFZ-containingFavorable Outcomes65.052–79Random effects meta-analysis
Systematic Review (through Feb 2012) nih.govXDR-TBCFZ-containingFavorable Outcomes66.042–89Random effects meta-analysis
Clinical Experience Study (n=32) ersnet.orgMDR-TB (n=32)CFZ-containingCulture Conversion53.1N/A
Clinical Experience Study (n=31) ersnet.orgMDR-TB (n=31)CFZ-containingTreatment Success48.4N/AAssociated with linezolid use

Non-Tuberculous Mycobacterial (NTM) Infections

This compound is being investigated for its potential in treating various non-tuberculous mycobacterial (NTM) infections. clinicaltrials.eu NTM diseases are increasing in prevalence and represent a significant health issue. nih.gov Treatment of NTM diseases often requires multidrug regimens with long durations and can have poor cure rates. oup.com this compound has shown promise in treating NTM infections, particularly in cases of intolerance to first-line drugs or drug resistance. clinicaltrials.eu

In vitro studies have shown that rapidly growing mycobacteria were susceptible to this compound. nih.gov Large in vitro studies of this compound against rapidly growing mycobacteria (RGM) isolates have shown promising results. nih.gov For instance, one study reported a Minimum Inhibitory Concentration (MIC) of <1 µg/mL in 180 isolates of M. abscessus group, M. fortuitum, and Mycobacterium chelonae and noted synergism between this compound and amikacin. nih.gov Another study found that 97% of 564 isolates of 21 species of RGM had an MIC <1 µg/mL and also observed synergism between this compound and amikacin. nih.gov this compound has been found to have the lowest MIC50 among seven antibiotics studied on 67 isolates of M. abscessus group and noted synergism between this compound and tigecycline. nih.gov

Data Table: In Vitro Activity of this compound Against RGM

Study/SourceIsolates TestedNumber of IsolatesMIC ResultSynergism Observed With
Shen et al. nih.govM. abscessus group, M. fortuitum, M. chelonae180<1 µg/mLAmikacin
van Ingen et al. nih.gov21 species of RGM564<1 µg/mL (97% of isolates)Amikacin
Singh et al. nih.govM. abscessus group67Lowest MIC50Tigecycline
Mycobacterium avium Complex (MAC)

This compound has been evaluated in the treatment of MAC lung disease and bacteremia. nih.gov Clinical results have been inconsistent, although additional clinical trials are underway. nih.gov this compound is highly active in vitro against clinically important NTM species, including Mycobacterium avium complex (MAC), and shows synergy with clarithromycin and amikacin. oup.comoup.com

A retrospective study conducted in Canada evaluated treatment outcomes of a this compound-containing regimen in patients with MAC-pulmonary disease (MAC-PD). e-emj.org Among 107 patients, 90 received a regimen of this compound, macrolide, and ethambutol. e-emj.org All 90 patients (100%) treated with this compound achieved sputum culture conversion, compared to 71% (10/14) in the rifampin group (P=0.0002). e-emj.org Microbiological relapse occurred in 49% (52/107) of patients, with no significant difference between the groups. e-emj.org

Another retrospective study from Korea assessed the outcomes of a this compound-containing regimen in severe MAC-PD. oup.come-emj.org Among 170 patients, 71.2% had cavitary disease. oup.com Within 6 months, 45.3% (77/170) achieved culture conversion, and 54.6% (84/154) attained microbiological cure. oup.com The dose of this compound (100 mg vs 50 mg) was not associated with culture conversion or microbiological cure. oup.com The microbiological cure rate reached 71.0% when this compound was administered for 6–12 months, compared to 23.1% when administered for <6 months. oup.com

A large-scale meta-analysis evaluating treatment outcomes of individuals diagnosed with MAC and treated with a this compound-based regimen compared to non-clofazimine regimens found that the pooled treatment success rates were 56.8% in this compound groups and 67.9% in non-clofazimine groups. nih.gov However, success rates were higher (58.7%) in the treatment of HIV patients with disseminated infection within the this compound group. nih.gov

Research in a murine model of chronic progressive MAC-pulmonary infection compared a standard regimen (macrolide, ethambutol, and rifampicin) with an alternative regimen (replacing rifampicin with this compound). frontiersin.org The this compound-containing regimen provided significantly improved treatment efficacy, with greater efficacy after 2 weeks of treatment than after 4 weeks of treatment with the standard regimen, by rapidly reducing bacterial loads and lung inflammation. frontiersin.org

Data Table: this compound in MAC-PD Treatment Outcomes

Study/SourcePatient PopulationRegimen TypeOutcome MeasureResult (%)Comparison Group Result (%)P-valueNotes
Canadian Retrospective Study e-emj.orgMAC-PD (n=107)CFZ + Macrolide + EthambutolSputum Culture Conversion100 (n=90)71 (n=14) (Rifampin group)0.0002
Canadian Retrospective Study e-emj.orgMAC-PD (n=107)CFZ-containingMicrobiological Relapse49 (n=52)N/ANo significant difference between groups
Korean Retrospective Study oup.comSevere MAC-PD (n=170)CFZ-containingCulture Conversion (within 6 months)45.3 (n=77)N/AN/A71.2% had cavitary disease
Korean Retrospective Study oup.comSevere MAC-PD (n=154)CFZ-containingMicrobiological Cure54.6 (n=84)N/AN/A
Korean Retrospective Study oup.comSevere MAC-PDCFZ-containingMicrobiological Cure (CFZ >= 6 months)71.023.1 (CFZ < 6 months)N/ADuration of CFZ administration matters
Meta-analysis nih.govMACCFZ-basedPooled Treatment Success56.867.9 (Non-CFZ groups)N/AOverall comparison
Meta-analysis nih.govHIV+ MAC disseminated infectionCFZ-basedPooled Treatment Success58.7N/AN/AHigher success in this subgroup
Mycobacterium abscessus Group

Infections caused by the Mycobacterium abscessus group are challenging to treat due to high virulence, antibiotic resistance, and the lack of effective therapies. nih.gov this compound holds promise as a chemotherapeutic for the treatment of RGM, including the M. abscessus group. nih.gov

In vitro studies have shown this compound to be active against M. abscessus group isolates and demonstrated synergism with amikacin and tigecycline. nih.gov this compound can prevent the regrowth observed when amikacin or clarithromycin is used alone against M. abscessus. nih.gov

A retrospective review examined the clinical, radiographic, and microbiologic outcomes of patients with M. abscessus group lung disease who received this compound as part of an initial or salvage multidrug regimen. nih.gov After 12 months of a this compound-containing regimen, 81% of patients exhibited treatment response based on symptomatic improvement, 31% demonstrated radiographic improvement, and 24% achieved sputum-negative culture conversion. nih.gov

This compound is considered a first-line oral antibiotic for the treatment of M. abscessus-pulmonary disease (MAB-PD). oup.com

Studies in animal models have also investigated this compound against M. abscessus. In fly models, this compound extended the lifespan of Drosophila infected with M. abscessus group by 2–3 days compared to control groups. nih.gov In a mouse model of pulmonary M. abscessus disease, this compound at 25 mg/kg once daily produced a reduction in bacterial burden in the lungs of C3HeB/FeJ and BALB/c mice. nih.gov This finding supports the use of this compound as a positive control comparator in preclinical efficacy assessments of agents for the treatment of M. abscessus pulmonary disease in mice. nih.gov

Data Table: this compound in M. abscessus Group Research

Study/SourceModel/Patient PopulationRegimen TypeOutcome MeasureResultNotes
Shen et al. nih.govIn vitro (M. abscessus group)This compound + AmikacinSynergism (MIC <1 µg/mL)ObservedAgainst 180 isolates
Singh et al. nih.govIn vitro (M. abscessus group)This compound + TigecyclineSynergism (Lowest MIC50 for CFZ)ObservedAgainst 67 isolates
Yang et al. nih.govPatients with M. abscessus group lung disease (retrospective)CFZ-containingTreatment Response (symptomatic improvement)81% (after 12 months)Initial or salvage regimen
Yang et al. nih.govPatients with M. abscessus group lung disease (retrospective)CFZ-containingRadiographic Improvement31% (after 12 months)Initial or salvage regimen
Yang et al. nih.govPatients with M. abscessus group lung disease (retrospective)CFZ-containingSputum-negative Culture Conversion24% (after 12 months)Initial or salvage regimen
Fly Model nih.govDrosophila infected with M. abscessus groupThis compoundExtended Lifespan2–3 daysCompared to control
Mouse Model (C3HeB/FeJ and BALB/c) nih.govPulmonary M. abscessus diseaseThis compound (25 mg/kg daily)Reduction in bacterial burden in lungsProduced desired reductionUsed as positive control comparator in preclinical studies
In Vitro nih.govM. abscessusThis compound + Amikacin or ClarithromycinPrevention of regrowth observed with monotherapyObservedSynergistic in vitro at specific concentrations

Leprosy (as a component of multidrug therapy)

This compound has been a cornerstone of multidrug therapy (MDT) for leprosy for decades. clinicaltrials.eunovartisfoundation.org The World Health Organization (WHO) recommended the use of MDT, including dapsone, rifampicin, and this compound, in 1981 to control primary and secondary resistance to monotherapy, prevent further resistance, and prevent relapses. novartisfoundation.orglshtm.ac.ukmedscape.com

For multibacillary leprosy, the WHO recommends a regimen including rifampicin, this compound, and dapsone. bmj.commedscape.com For paucibacillary leprosy, the WHO initially recommended rifampicin and dapsone, but the Indian Council of Medical Research has recommended adding this compound to the regimen based on published data suggesting it can be safely used along with dapsone and rifampicin for the 6-month MDT. bmj.commedscape.com Adding this compound to paucibacillary leprosy treatment may reduce the repercussions of an incorrect operational classification. nih.gov

A systematic review and meta-analysis evaluating the addition of this compound to paucibacillary leprosy treatment found that cure and relapse rates were not different with the addition of this compound, demonstrating very low certainty of evidence. nih.gov

For rifampicin-resistant leprosy, the WHO recommends treatment with at least two of clarithromycin, minocycline, and a quinolone, in addition to this compound daily for 6 months, followed by this compound and one of the other drugs for an additional 18 months. medscape.com In cases of both rifampicin and ofloxacin resistance, the recommended treatment is clarithromycin, minocycline, and this compound for 6 months, followed by clarithromycin or minocycline and this compound for an additional 18 months. medscape.com

This compound is also used in the treatment of Erythema Nodosum Leprosum (ENL), an inflammatory complication of leprosy. medscape.com

Studies in Animal Models of Mycobacterial Infections

Animal models are crucial for preclinical efficacy evaluations of experimental therapeutics against mycobacterial infections. This compound has been studied in various animal models.

In severe combined immunodeficiency mouse models, treatment with this compound individually significantly reduced bacterial burden in the lung, spleen, and liver in mycobacterial infections. nih.gov The most significant reduction was observed with the combination treatment of this compound and bedaquiline. nih.gov

Studies in mice lacking interferon-gamma demonstrated that this compound treatment afforded a statistically significant reduction in the bacterial burden in the lung, spleen, and liver after 8 days of treatment. nih.gov

A pharmacokinetic-pharmacodynamic (PK-PD) study of this compound in the mouse model suggested that lower doses could be effectively used for the treatment of tuberculosis, although this requires investigation for NTM. nih.govoup.com Achieving adequate exposures quickly seems important, as this compound shows exposure-driven sterilizing and a treatment-shortening effect in TB in mouse models. oup.com

In a murine model of chronic progressive MAC-pulmonary infection, a this compound-containing regimen showed significantly improved treatment efficacy compared to a standard regimen, rapidly reducing bacterial loads and lung inflammation. frontiersin.org

In a mouse footpad model of Mycobacterium ulcerans disease (Buruli ulcer), the combination of rifampin plus this compound was evaluated. plos.org Treatment with this compound alone had little or no impact on lesion size and bacterial load. plos.org However, the combination of RIF+CFZ initially acted more slowly than RIF+streptomycin or RIF+clarithromycin but was as effective as RIF+streptomycin and better than RIF+clarithromycin at preventing relapse of infection in mice treated for 6 weeks and followed up for 24 weeks. plos.org There were no relapses in RIF+streptomycin treated mice, one (5%) relapse in RIF+this compound-treated mice, but >50% in RIF+clarithromycin treated mice. plos.org

In a mouse model of pulmonary M. abscessus disease, this compound at 25 mg/kg once daily produced a reduction in bacterial burden in the lungs. nih.gov This dose and dosing frequency are considered suitable for preclinical efficacy testing of experimental agents against M. abscessus disease in mice. nih.gov

Research in Inflammatory and Autoimmune Diseases

This compound's anti-inflammatory and immunomodulatory effects are thought to contribute to its potential therapeutic benefits in a range of dermatological and systemic inflammatory conditions rjpbcs.compatsnap.comwikipedia.orgmdpi.comoup.comdrugbank.com. Research has explored its use in diseases characterized by chronic inflammation and immune dysregulation.

Erythema Nodosum Leprosum (ENL)

Erythema Nodosum Leprosum (ENL) is a serious inflammatory complication of leprosy lshtm.ac.uk. This compound has been recognized for its anti-inflammatory properties in ENL patients since the 1960s rjpbcs.comresearchgate.net. Its effectiveness in suppressing ENL has been supported by numerous studies rjpbcs.comresearchgate.net. Research indicates that this compound treatment can be superior to prednisolone in achieving treatment success and superior to thalidomide in preventing recurrences in ENL patients lshtm.ac.ukresearchgate.net. A Cochrane review of interventions in ENL included randomized controlled trials that showed significant long-term benefits with this compound treatment compared to thalidomide (fewer recurrences) or prednisolone (more treatment success) researchgate.net. One double-blind controlled trial involving 24 lepromatous leprosy patients in reaction demonstrated that this compound controlled ENL symptoms better than prednisolone and appeared significantly superior in preventing recurrence once the reaction was controlled researchgate.net. Another small randomized controlled trial comparing this compound and pentoxifylline in combination with prednisolone for ENL found sustained efficacy in the this compound group researchgate.net.

Chronic Granulomatous Disease

Chronic Granulomatous Disease (CGD) is a genetic disorder that affects phagocytes, leading to recurrent infections and granuloma formation. Research has suggested potential applications for this compound in treating CGD patsnap.com. This compound's ability to accumulate in macrophages and its potential interactions with neutrophil granulocytes and macrophages, as well as its influence on phagocytosis, may be relevant in the context of CGD, which involves dysfunctional phagocytes patsnap.commedicaljournals.semedicaljournals.se.

Discoid Lupus Erythematosus

Discoid Lupus Erythematosus (DLE) is a chronic form of cutaneous lupus erythematosus researchgate.netdovepress.com. This compound has been investigated as a treatment option for DLE due to its anti-inflammatory and immunosuppressive properties wikipedia.orgresearchgate.netdovepress.com. Early research suggested it was effective, with one study reporting remission in 17 out of 26 patients with chronic DLE wikipedia.orgresearchgate.net. A randomized clinical trial compared this compound to chloroquine in patients with cutaneous lupus erythematosus, including those with DLE dovepress.com. At 6 months, 82.4% of patients in the this compound group experienced complete or almost complete resolution of skin lesions, compared to 75% in the chloroquine group dovepress.com. While this difference was not statistically significant in this particular study, the findings suggested that this compound could be a therapeutic option for patients with exclusively cutaneous lesions and contraindications to chloroquine dovepress.commedscape.com. Another study administering this compound to nine DLE patients over six months observed complete suppression or improvement in every patient, becoming evident within three months researchgate.netcapes.gov.br.

Here is a summary of findings from a randomized clinical trial comparing this compound and Chloroquine in Cutaneous Lupus Erythematosus (including DLE):

Treatment GroupNumber of Patients (CLE, DLE)Complete or Almost Complete Resolution at 6 Months
This compound16 (14 DLE)82.4%
Chloroquine17 (12 DLE)75%

Data derived from Bezerra et al. dovepress.com

Pustular Psoriasis

Pustular psoriasis is a severe form of psoriasis characterized by the eruption of sterile pustules medicaljournalssweden.seoup.com. This compound has been reported to be effective in the treatment of pustular psoriasis wikipedia.orgmedicaljournalssweden.seoup.com. Case reports have described successful treatment outcomes in patients with generalized pustular psoriasis rjpbcs.comwikipedia.org. The mechanism may involve this compound's effect on neutrophil function, which is implicated in the pathogenesis of pustular psoriasis medicaljournalssweden.se. One study found that this compound enhanced the phagocytic function of neutrophil leucocytes in patients with pustulosis palmaris et plantaris, a condition with similarities to pustular psoriasis, and this enhancement was associated with the abatement of pustules medicaljournalssweden.se.

Melkersson-Rosenthal Syndrome

Melkersson-Rosenthal Syndrome (MRS) is a rare neurological disorder characterized by a triad of facial palsy, fissured tongue, and orofacial swelling researchgate.netnih.govpraxis-schuster.ch. Cheilitis granulomatosa, characterized by lip swelling, is often considered a monosymptomatic form of MRS researchgate.netpraxis-schuster.ch. This compound has been demonstrated to be effective in the management of MRS rjpbcs.comwikipedia.orgresearchgate.netnih.gov. Studies have reported complete remission or clinical improvement in patients treated with this compound rjpbcs.com. A pilot study involving seven patients with cheilitis granulomatosa or complete MRS treated with this compound observed beneficial effects in all patients, with prompt and complete suppression of the characteristic variable attacks of lip swelling nih.gov. Persistent residual swelling, however, responded less rapidly and often incompletely nih.gov. Some patients remained symptom-free after drug withdrawal, while others relapsed and responded to a second course of this compound nih.govpraxis-schuster.ch. Histological improvement with clearance of granulomata has been observed in some cases, although edema may persist praxis-schuster.choup.com.

Necrobiosis Lipoidica and Granuloma Annulare

Necrobiosis Lipoidica (NL) and Granuloma Annulare (GA) are chronic granulomatous inflammatory skin disorders medicaljournals.semedicaljournals.senih.govresearchgate.netnih.govresearchgate.net. This compound has been explored as a therapeutic alternative for both conditions rjpbcs.commedicaljournals.semedicaljournals.seresearchgate.netnih.gov. In a study of 20 patients with either disseminated granuloma annulare or NL, 60% responded to this compound treatment, with 30% achieving complete remission medicaljournals.semedicaljournals.seresearchgate.net. A case report described the successful treatment of ulcerated NL with this compound, leading to complete remission within 5 months in a patient resistant to previous therapies rjpbcs.commedicaljournals.semedicaljournals.se. For generalized, severe, and recalcitrant forms of GA, this compound has been among the treatments proposed with variable success mdpi.com. This compound's in vitro antigranulomatous effects and interactions with macrophages and neutrophils may contribute to its activity in these conditions medicaljournals.semedicaljournals.se.

Here is a summary of findings from a study on this compound treatment for Necrobiosis Lipoidica and Granuloma Annulare:

ConditionNumber of PatientsResponse RateComplete Remission Rate
Disseminated Granuloma Annulare1060%30%
Necrobiosis Lipoidica1060%30%

Data derived from Mensing (1989) as reported in Benedix et al. and Hanke et al. medicaljournals.semedicaljournals.seresearchgate.netnih.gov

Rheumatoid Arthritis and Type 1 Diabetes (Potential Applications)

Research suggests this compound may have potential applications in treating rheumatoid arthritis (RA) and type 1 diabetes (T1D). Studies have indicated that this compound acts as a Kv1.3 (KCNA3) channel blocker in human T cells. wikipedia.org This is notable because Kv1.3-high effector memory T cells (TEM) are implicated in the development of these autoimmune diseases, and Kv1.3 activity is crucial for TEM stimulation and proliferation by regulating calcium influx. wikipedia.org While this compound's immunosuppressive effects were observed in animal models, inhibiting macrophage and neutrophil motility and lymphocyte proliferation in vitro, evidence supporting its use in conditions other than leprosy is currently considered insufficient. wikipedia.org

Research in Oncology

This compound is being investigated for its anticancer properties across various malignancies, often linked to its ability to inhibit the Wnt signaling pathway, which is frequently overactivated in numerous cancer types. nih.govunige.chunil.chresearchgate.net

Triple-Negative Breast Cancer

Preclinical studies have shown this compound's effectiveness against triple-negative breast cancer (TNBC), an aggressive subtype lacking targeted therapy. nih.govunige.chcureswithinreach.orgbreastcancer-news.com Research indicates that this compound inhibits Wnt signaling and cell proliferation in TNBC cell lines and suppresses tumor growth in mouse xenograft models. nih.govunige.chunil.chbreastcancer-news.com this compound has also demonstrated compatibility with doxorubicin, showing additive effects on tumor growth suppression without synergistic adverse effects in mouse models. nih.govunil.ch This, along with its established pharmacokinetic profile, positions this compound as a candidate for repositioning clinical trials in TNBC. nih.govunil.ch

Colorectal, Liver, Ovarian, and Brain Tumors

Beyond TNBC, the applicability of this compound is being explored in other Wnt-dependent cancers, including hepatocellular carcinoma (liver), glioblastoma (brain), colorectal, and ovarian cancers. nih.govunige.ch Studies using panels of cell lines from these cancer types suggest that this compound's efficacy correlates with the basal levels of Wnt pathway activation and its ability to inhibit Wnt signaling. nih.gov this compound has shown antiproliferative effects in colorectal cancer cell lines, with varying IC50 values depending on the cell line. nih.gov Research indicates that this compound decreases cell growth in some colorectal, liver, ovarian, and brain tumor cell lines, with more pronounced decreases observed in cell lines exhibiting stronger Wnt signaling overactivation. unige.ch In glioblastoma, this compound has been shown to suppress cell proliferation, induce apoptosis, and inhibit invasion in vitro by downregulating Wnt6-mediated Wnt/β-catenin pathway activation. nih.gov

Here is a table summarizing some preclinical findings on this compound's effects on various cancer cell lines:

Cancer TypeCell Lines TestedObserved EffectKey MechanismSource
Triple-Negative Breast CancerPanel of TNBC cell linesInhibition of cell proliferation, suppression of tumor growth (in vivo)Inhibition of canonical Wnt signaling nih.govunil.ch
Colorectal CancerSW48, and other CRC cell linesAntiproliferative effect (IC50 values around 2-8 µM observed in some lines)Inhibition of Wnt signaling nih.gov
Hepatocellular CarcinomaPanel of cell linesDecreased cell growth (correlated with Wnt activation)Inhibition of Wnt signaling nih.govunige.ch
Ovarian CancerPanel of cell linesDecreased cell growth (correlated with Wnt activation)Inhibition of Wnt signaling nih.govunige.ch
GlioblastomaGlioblastoma cell linesSuppression of proliferation, induction of apoptosis, inhibition of invasionDownregulation of Wnt6-mediated Wnt/β-catenin nih.gov
Multiple MyelomaU266 MM cell line, other hematological cell linesGrowth suppression (up to 72%), synergistic inhibition with cisplatinInduction of apoptosis (intrinsic pathway) researchgate.net

Multiple Myeloma

This compound has shown promise in the treatment of multiple myeloma (MM). Studies have identified this compound as a potent aryl hydrocarbon receptor (AHR) antagonist and a suppressor of polyamine biosynthesis, both of which are relevant in MM. nih.govwakehealth.edu In a transgenic mouse model of MM and in immunocompromised mice with MM cell xenografts, this compound demonstrated high efficacy, comparable to bortezomib, a standard MM treatment. nih.govwakehealth.edu In vitro studies on the U266 MM cell line showed significant growth suppression with this compound treatment, achieving an IC50 value of 9.8 ± 0.7 μM. researchgate.net this compound also exhibited a synergistic inhibitory effect when combined with cisplatin in this cell line. researchgate.net Mechanistic studies suggest this compound induces apoptosis through mitochondrial membrane depolarization, changes in cell membrane asymmetry, and increased caspase-3 activity in MM cells. researchgate.net Furthermore, this compound has been shown to synergize with proteasome inhibitors (like ixazomib) and immunomodulatory drugs (like lenalidomide) in various MM cell lines, including those resistant to standard treatments. researchgate.net

Synergistic Effects with Immunotherapy (e.g., Anti-PD-1/CTLA-4)

Recent research highlights this compound's potential to enhance the efficacy of dual immune checkpoint blockade (ICB) therapy, specifically with anti-PD-1 and CTLA-4 inhibitors. houstonmethodist.orgsafetherapeutics.comresearchgate.netwilliamscancerinstitute.comnih.govaacrjournals.org A screening of FDA-approved drugs identified this compound as a compound that could optimize anti-PD-1 + CTLA-4 ICB. researchgate.netnih.gov Studies in various mouse models of cancer, including colorectal cancer, melanoma, B-cell lymphoma, and lung carcinoma, demonstrated that this compound synergizes with ICB in reducing tumor burden, leading to complete eradication of advanced tumors in some cases when used in combination. williamscancerinstitute.comaacrjournals.org this compound treatment also restored responsiveness in several models resistant to ICB. aacrjournals.org Mechanistically, this compound promotes E2F1 activation in CD8+ T cells, which helps overcome resistance and enhances antitumor immune responses. safetherapeutics.comresearchgate.netnih.gov It also counteracts pathogenic Th17 cells, which are associated with immune-related adverse events (irAEs), potentially mitigating these side effects without compromising antitumor efficacy, unlike steroids. safetherapeutics.comresearchgate.netwilliamscancerinstitute.comnih.govaacrjournals.org In glioblastoma mouse models, the combination of this compound and anti-PD-1 therapy significantly reduced tumor growth and intracranial invasion, prolonging survival and reshaping the tumor immune microenvironment by increasing cytotoxic CD8+ T cell infiltration and reducing regulatory T cells. nih.gov

Research in Other Infectious Diseases

Beyond leprosy, this compound is being investigated for its activity against other infectious diseases, particularly those caused by mycobacteria. It has demonstrated in vitro activity against nontuberculous mycobacteria (NTM), including Mycobacterium avium complex (MAC). clinicaltrials.euoup.comnih.gov this compound is being studied as part of combination therapies for multidrug-resistant tuberculosis (MDR-TB) and extensively drug-resistant TB (XDR-TB), showing potential to improve treatment success rates. clinicaltrials.eunih.govasm.org Observational studies have explored the use of oral this compound in multidrug regimens for pulmonary and extrapulmonary NTM infections, with varying cure rates reported depending on the infection site. oup.comcontagionlive.com Research also suggests a synergistic effect between this compound and other antimicrobials against various NTM species. nih.gov Clinical trials are underway to explore new uses and formulations, including an inhaled form for NTM lung infections and its potential in treating cryptosporidiosis in HIV-positive patients. clinicaltrials.eu

Cryptosporidiosis

Research has identified this compound as a potential treatment for cryptosporidiosis, a diarrheal disease caused by Cryptosporidium species. A high-throughput screen of a large compound library identified this compound among hits with sub-micromolar activity against C. parvum and C. hominis. plos.org In vitro studies demonstrated potent and selective activity against C. parvum, with an EC₅₀ of 15 nM. plos.org

This compound is known to accumulate in epithelial cells of the small intestine, the primary site of Cryptosporidium infection, which supports its potential as a treatment. plos.org In a mouse model of acute cryptosporidiosis, daily administration for three consecutive days or a single high dose resulted in a reduction of oocyst shedding. plos.org

Despite promising preclinical results, a phase 2a clinical trial evaluating this compound in HIV-infected adults with cryptosporidiosis did not show improved microbiological or clinical outcomes compared to placebo. asm.orgasm.orgnih.gov Analysis suggested that the this compound concentrations achieved in the trial participants were likely below the levels required for efficacy against cryptosporidiosis, despite using a dosing regimen exceeding typical recommendations for mycobacterial therapy. asm.orgasm.org

Table 1: Summary of this compound Research in Cryptosporidiosis

Study TypeModel/OrganismKey FindingCitation
High-throughput ScreenC. parvum, C. hominis (in vitro)Potent and selective activity (EC₅₀ = 15 nM against C. parvum) plos.org
PreclinicalMouse model (C. parvum)Reduced oocyst shedding with daily or single high dose regimens plos.org
Clinical (Phase 2a)HIV-infected adultsNo significant improvement in microbiological or clinical outcomes vs placebo asm.orgasm.orgnih.gov

COVID-19

This compound has been investigated for its potential activity against SARS-CoV-2, the virus responsible for COVID-19. Studies have shown that this compound possesses pan-coronaviral inhibitory activity and can antagonize SARS-CoV-2 replication in various in vitro systems, including human embryonic stem cell-derived cardiomyocytes and ex vivo lung cultures. nih.govresearchgate.net

The compound appears to inhibit multiple steps of viral replication, suggesting diverse underlying antiviral mechanisms. nih.govresearchgate.net Research indicates that this compound can block viral entry into cells and disrupt RNA replication. news-medical.netcontagionlive.com In a hamster model of SARS-CoV-2 pathogenesis, both prophylactic and therapeutic administration of this compound significantly reduced viral load in the lung and decreased fecal viral shedding. nih.govresearchgate.netnews-medical.netcontagionlive.comabs-cbn.com It also prevented the exaggerated inflammatory response, or "cytokine storm," associated with severe COVID-19. news-medical.netcontagionlive.comabs-cbn.comscitechdaily.com

Furthermore, this compound has shown synergistic effects when administered with remdesivir in hamster models, improving viral control and potentially allowing for reduced dosages of both drugs. news-medical.netabs-cbn.comscitechdaily.comoup.com

Table 2: Summary of this compound Research in COVID-19

Study TypeModel/SystemKey FindingCitation
PreclinicalIn vitro systems (human embryonic stem cell-derived cardiomyocytes, ex vivo lung cultures), Hamster model (SARS-CoV-2)Pan-coronaviral inhibitory activity, antagonizes SARS-CoV-2 replication, reduces viral load in lung and fecal shedding, prevents cytokine storm nih.govresearchgate.netnews-medical.netcontagionlive.comabs-cbn.com
PreclinicalHamster model (SARS-CoV-2) with remdesivirExhibits synergy with remdesivir, improving viral control news-medical.netabs-cbn.comscitechdaily.comoup.com

Other Protozoal and Fungal Infections (e.g., Trypanosoma cruzi, Babesia, Candida albicans)

This compound has demonstrated activity against a range of protozoal and fungal pathogens. It is reported to be susceptible against parasites including Trypanosoma cruzi and Babesia species. oup.comresearchgate.netoup.com Research indicates that this compound can inhibit trypanosomal proline transporters and enhance the retention of benznidazole, a common treatment for Trypanosoma cruzi infections. nih.govfrontiersin.orgplos.org

Studies have also shown this compound's activity against the yeast Candida albicans. oup.comresearchgate.netoup.com this compound can potentiate the effects of several antifungal drugs, including fluconazole, posaconazole, and caspofungin, against Candida species and Aspergillus fumigatus. nih.govplos.orgresearchgate.net It is suggested that this compound elicits cell membrane stress and activates protein kinase C-like 1 (Pkc1) signaling, which is also targeted by some antifungal agents like fluconazole and caspofungin in Candida albicans. nih.govplos.org In vitro studies have shown that the addition of this compound can reduce the minimum inhibitory concentrations (MICs) of caspofungin for various Candida species, including some clinical isolates of C. albicans. researchgate.net

Table 3: this compound Activity Against Other Protozoa and Fungi

PathogenObserved Activity/FindingCitation
Trypanosoma cruziSusceptible to this compound; inhibits trypanosomal proline transporters; enhances benznidazole retention oup.comresearchgate.netoup.comnih.govfrontiersin.orgplos.org
Babesia spp.Susceptible to this compound; combination with diminizene aceturate showed promise in mouse models oup.comresearchgate.netoup.comnih.govplos.org
Candida albicansSusceptible to this compound; potentiates antifungal drugs (fluconazole, posaconazole, caspofungin); reduces caspofungin MIC oup.comresearchgate.netoup.comnih.govplos.orgresearchgate.net
Aspergillus fumigatusPotentiates antifungal drugs (posaconazole, caspofungin) nih.govplos.orgresearchgate.net

Research in Neurodegenerative Diseases

Huntington's Disease and Other PolyQ Protein-Related Diseases

Research has explored the potential of this compound in the context of neurodegenerative diseases, particularly those linked to polyglutamine (polyQ) protein expansions, such as Huntington's disease (HD). These diseases are characterized by the aggregation of proteins containing expanded CAG repeats. ki.sescilifelab.seresearchgate.netbiorxiv.orgnih.govresearchgate.net

A high-throughput chemical screen aimed at identifying compounds that reduce the toxicity of a protein fragment from Huntington's disease protein (huntingtin) containing an expanded polyQ tract (Htt-Q94) identified this compound as a hit. researchgate.netbiorxiv.orgnih.govresearchgate.net Subsequent validation in several in vitro models confirmed this finding. researchgate.netbiorxiv.orgnih.govresearchgate.net

Computational analyses and biochemical assays suggest that this compound acts as an agonist of peroxisome proliferator-activated receptor gamma (PPARγ). researchgate.netbiorxiv.orgnih.govresearchgate.netki.se PPARγ has been previously implicated as a potential therapeutic target in HD due to its role in stimulating mitochondrial biogenesis. researchgate.netbiorxiv.orgnih.gov In line with this mechanism, this compound was found to rescue mitochondrial dysfunction triggered by Htt-Q94 expression. researchgate.netbiorxiv.orgnih.govresearchgate.netki.se Importantly, this compound also demonstrated the ability to limit polyQ toxicity in in vivo models, including developing zebrafish and neuron-specific worm models of polyQ disease. researchgate.netbiorxiv.orgnih.gov While these preclinical findings are promising, it is noted that this compound's efficiency in entering the nervous system may be a limitation requiring further investigation in mammalian models. ki.sescilifelab.se

Table 4: this compound Research in Huntington's Disease and PolyQ Diseases

Study TypeModel/SystemKey FindingCitation
High-throughput ScreenIn vitro (U2OS cells expressing Htt-Q94 fragment)Identified this compound as a compound reducing Htt-Q94 toxicity researchgate.netbiorxiv.orgnih.govresearchgate.net
PreclinicalIn vitro models, Zebrafish model (polyQ toxicity), Worm model (neuron-specific polyQ disease)Validated this compound's ability to reduce polyQ toxicity; limits polyQ toxicity in in vivo models researchgate.netbiorxiv.orgnih.govresearchgate.net
Mechanistic StudiesComputational analysis, Biochemical assays, In vitro models (U2OS cells expressing Htt-Q94 fragment)Acts as a PPARγ agonist; rescues mitochondrial dysfunction triggered by Htt-Q94 expression; stimulates mitochondrial biogenesis via PPARγ activation researchgate.netbiorxiv.orgnih.govresearchgate.netki.se

Research Methodologies and Models

In Vitro Studies (e.g., Cell Lines, Microsomes)

In vitro studies are fundamental to understanding the direct effects of clofazimine at the cellular and subcellular levels. These studies often involve the use of various cell lines and cellular fractions like microsomes.

Studies using human liver microsomes have been conducted to characterize the metabolic pathways of this compound. This research has identified eight metabolites, including four oxidative metabolites, three glucuronide conjugates, and one sulfate conjugate. nih.govresearchgate.net The formation of hydroxylated this compound and hydrated this compound can occur even without the NADPH generating system, suggesting a potential nonenzymatic pathway. nih.govresearchgate.net Hydrolytic-dehalogenated this compound is primarily catalyzed by CYP1A2, while hydrolytic-deaminated this compound is formed by CYP3A4/A5. nih.govresearchgate.net Glucuronide conjugates of hydroxylated and hydrated this compound show catalytic activity with UGT1A1, UGT1A3, and UGT1A9. nih.govresearchgate.net Hydrolytic-deaminated this compound glucuronide is catalyzed by UGT1A4, UGT1A9, UGT1A3, and UGT2B4. nih.govresearchgate.net These findings indicate that CYP1A2 and CYP3A enzymes are involved in oxidative metabolism, while UGT1A1, 1A3, 1A4, 1A9, and 2B4 are involved in the formation of glucuronide conjugates of oxidative metabolites of this compound. nih.govresearchgate.net

In vitro cytotoxicity assays using various cell lines, including prostate cancer (PCa) cell lines, have been employed to assess this compound's effectiveness. medrxiv.org These assays can quantify the response to this compound and investigate cellular pathways affected by the compound. medrxiv.org For example, studies have shown that this compound treatment can up-regulate cellular pathways associated with apoptosis and ER stress in PCa cells. medrxiv.org

Microsomal stability studies, often using mouse and human microsomal fractions, are used to predict the in vitro half-life of compounds, including this compound derivatives. frontiersin.org These studies assess the metabolic degradation rate of a compound. frontiersin.org

In Vivo Animal Models (e.g., Mice, Zebrafish, Worms, Guinea Pigs, Nonhuman Primates)

In vivo animal models are crucial for evaluating the efficacy, pharmacokinetics, and effects of this compound within a complex biological system. A variety of animal species are utilized, each offering unique advantages for specific research questions.

Mouse models are frequently used in tuberculosis drug development to provide information on pharmacokinetics and in vivo efficacy of novel compounds. plos.org Different mouse models, such as the immunocompetent C57BL/6 mouse model and immunocompromised IFN-γ gene knockout mice, are used to study M. tuberculosis infection and evaluate experimental compounds. plos.org Following drug treatment in mice, a homogenous bacillary reduction across lung granulomas has been observed. plos.org Mouse models, including mouse xenograft models, have also been used to demonstrate the in vivo efficacy of this compound in drug-resistant forms of chronic myeloid leukemia and multiple myeloma. medrxiv.org Acute TB mouse models (e.g., BALB/c mice infected with Mtb H37Rv) are used to indicate the reduction of bacterial load after treatment. scienceopen.com

Guinea pigs are another important animal model for tuberculosis research, particularly because they can develop lung pathology that reflects human disease progression, including necrosis, calcification, and fibrosis of lesions. plos.org In guinea pigs, remaining extracellular bacilli have been observed to persist in lesions with residual necrosis after drug treatment. plos.org Guinea pig models are also used to assess the immune response and protective efficacy of vaccines against infections. researchgate.net

Zebrafish (Danio rerio) have been utilized to study M. leprae-induced granulomas. nih.gov Upon infection, zebrafish show well-formed, non-caseating granulomas that develop rapidly and control bacterial growth. nih.gov Zebrafish larvae, being optically transparent and lacking adaptive immunity at an early stage, are useful for examining early nerve damage. nih.gov

Non-human primates, such as sooty mangabey monkeys and chimpanzees, have been documented to harbor natural infection with M. leprae. nih.gov Research suggests that M. leprae can be transmitted between humans and non-human primates, and among non-human primates themselves. nih.gov Non-human primates are also important models for understanding dysfunction linked to pre-eclampsia and fetal growth restriction due to similarities in placental development and spiral artery invasion compared to humans. nih.gov

Animal models are also used in the evaluation of new tuberculosis vaccines, with mice, guinea pigs, and non-human primates being widely used species in sequential order. researchgate.net

Population Pharmacokinetic Modeling

Population pharmacokinetic (PK) modeling is a statistical approach used to analyze drug concentration data from a group of individuals and identify factors that contribute to variability in drug exposure. This method is applied to this compound to better understand its disposition in different populations.

This compound pharmacokinetics have been characterized using population PK models. A three-compartment model has been used to describe this compound pharmacokinetics in participants with pulmonary TB. researchgate.net In this model, clearance was estimated at 11.5 L/h and peripheral volume at 10,500 L for a typical participant. researchgate.net Body fat content was found to strongly influence this compound disposition, with lower plasma exposures observed in women with higher body fat fraction during the initial months of treatment. researchgate.net

Another population PK model for this compound consisted of a two-compartment disposition model with first-order absorption. diva-portal.org Inter-individual variability was supported for apparent oral clearance (CL/F), the first-order absorption rate constant (ka), and apparent volume of distribution (V/F). diva-portal.org Interoccasional variability was statistically significant for bioavailability (F). diva-portal.org

In children with rifampicin-resistant tuberculosis, the population PK of this compound was best described by a one-compartment distribution with first-order absorption and elimination. asm.org Allometric scaling by body weight on clearance and volume of distribution improved the model fit. asm.org HIV was identified as a significant covariate on CL/F, with children living with HIV showing higher CL/F. asm.org Age significantly affected Vd/F, with an increase per year of age. asm.org

Studies in patients with pulmonary non-tuberculous mycobacterial infection have also utilized population pharmacokinetic models. asm.org These models have incorporated body weight in CL/F and body mass index in V/F, indicating that higher body weight is associated with lower steady-state this compound concentration and higher body mass index with greater distribution to tissues. asm.org

Drug Screening Strategies

Drug screening strategies involve systematically testing a library of compounds to identify those with desired biological activity. This compound has been identified through such strategies in the context of enhancing cancer immunotherapy.

An illuminating drug screening strategy that examined over 3,000 FDA-approved drugs identified this compound as a compound that could potentially enhance the efficacy and reduce the toxicity of dual immune checkpoint blockade therapy (anti-PD-1 and CTLA-4). houstonmethodist.orgnih.govcornell.eduresearchgate.net This screening revealed that this compound maximized the benefits of this potent combination therapy. houstonmethodist.org this compound was found to outperform standard responses, such as steroid treatment or reduction in checkpoint blockade dosages, in reversing the lethality of immune-related adverse events while also potentiating curative responses. houstonmethodist.orgresearchgate.net

Phenotype-based high-throughput drug screening has also been used to demonstrate the in vitro and in vivo efficacy of this compound in drug-resistant forms of chronic myeloid leukemia and multiple myeloma. medrxiv.org

Molecular and Cellular Assays (e.g., DNA fragmentation, Caspase-3 activity, Chromatin Accessibility)

Molecular and cellular assays are employed to investigate the specific mechanisms by which this compound exerts its effects at the molecular and cellular levels.

Studies have investigated the apoptosis-inducing activity of this compound in macrophages using assays such as DNA ladder formation and caspase-3 activity. nih.gov this compound treatment has been shown to induce DNA fragmentation into integer multiples of 180 bp, indicative of DNA endonuclease activation. nih.gov This this compound-induced DNA fragmentation in THP-1 cells was blocked by treatment with the endonuclease inhibitor ZnCl2. nih.gov Significant enhancement of caspase-3 activity has been observed in this compound-treated macrophages and THP-1 cells. nih.gov Enhanced expression of cleaved caspase-3 and caspase-9 has been detected in cells treated with this compound. nih.gov PARP, a DNA-repairing enzyme cleaved by caspase-3, was also significantly activated in this compound-treated THP-1 cells. nih.gov Colorimetric assays have been used to measure caspase-3 activity in cell lysates. nih.gov

Caspase 3/7 activity assays for apoptosis are also used to quantify the response to this compound in cell lines, such as PCa cell lines. medrxiv.org

Chromatin accessibility assays, such as ATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing), are used to map open chromatin regions genome-wide. bdbiosciences.comnih.gov This provides insights into regulatory landscapes and can delineate the location of active regulatory elements like promoters, enhancers, and transcription factor binding sites. bdbiosciences.com While the provided search results discuss these assays in general and in the context of other compounds or biological processes, they highlight the techniques available for studying changes in chromatin structure that could potentially be influenced by this compound. Sequential changes in chromatin accessibility play a key role in mediating stage-specific cis-regulatory module activity and gene expression. nih.gov

Aldehyde dehydrogenase (ALDH) activity assays are used to assess cancer cell stemness, a characteristic associated with the aggressiveness of cancer. medrxiv.org Studies have found that this compound reduces ALDH activity. medrxiv.org

Whole transcriptome analysis, such as next-generation RNA sequencing, is used to investigate drug-induced changes in gene expression. medrxiv.org Following this compound treatment, modulation in the expression of several non-coding RNAs associated with tumor cell proliferation, cell migration, and drug resistance has been observed. medrxiv.org

Future Research Directions and Unanswered Questions

Elucidation of Remaining Mechanisms of Action

While some mechanisms of clofazimine's action have been identified, a complete understanding is still being pursued. Research suggests that its anti-mycobacterial activity may involve interaction with bacterial DNA through intercalation, disruption of the DNA template function, and the generation of reactive oxygen species (ROS) which damage cellular components. drugbank.compatsnap.com Another proposed mechanism involves interference with the mycobacterial respiratory chain and ion transporters, potentially by acting as artificial electron acceptors. mdpi.comoup.com this compound has also been shown to increase the effect of bacterial phospholipase A2, leading to the release of toxic lysophospholipids. mdpi.com

Beyond its effects on bacteria, this compound's anti-inflammatory and immunosuppressive properties are also under investigation. It has been found to inhibit human Kv1.3 potassium channels in T lymphocytes, perturbing calcium oscillations and inhibiting downstream signaling pathways involved in immune responses. wikipedia.orgplos.orglabmedica.comsciencedaily.com This mechanism is thought to contribute to its potential in treating autoimmune diseases. plos.orglabmedica.comsciencedaily.com Further research is needed to fully detail these multifaceted mechanisms and their relative contributions to this compound's diverse therapeutic effects. drugbank.compatsnap.commdpi.comoup.com

Understanding and Mitigating Drug Resistance

The emergence of drug resistance poses a significant challenge to the continued efficacy of this compound, particularly in the treatment of multidrug-resistant tuberculosis (MDR-TB). biorxiv.orgfrontiersin.orgacademicjournals.org While the frequency of resistance in Mycobacterium tuberculosis has historically been low, it can emerge, especially among rapidly growing mycobacteria. oup.com

Research indicates that mutations in specific genes are associated with this compound resistance. The Rv0678 gene, encoding the MmpR5 repressor protein, is a prominent site for mutations conferring resistance to this compound, and notably, also to bedaquiline, leading to cross-resistance. biorxiv.orgfrontiersin.orgacademicjournals.orgresearchgate.netersnet.orgnih.gov Mutations in pepQ and Rv1979c genes have also been linked to this compound and bedaquiline cross-resistance. frontiersin.orgnih.gov Additionally, a mutation in the intergenic region of the Rv1453 gene has been identified and linked to this compound resistance. asm.org

Further research is crucial to comprehensively understand the molecular mechanisms underlying the development of resistance, including the role of efflux systems and the impact of specific genetic mutations. biorxiv.orgfrontiersin.orgacademicjournals.org This knowledge is essential for developing strategies to mitigate resistance, such as optimizing combination therapies and developing rapid diagnostic tools to detect resistant strains. biorxiv.orgersnet.orgnih.gov

Novel Therapeutic Formulations and Delivery Systems (e.g., Pulmonary Delivery)

The lipophilic nature and variable oral bioavailability of this compound present challenges for optimal drug delivery and can lead to systemic toxicity. technologypublisher.comnih.govfrontiersin.orgnih.gov This has driven research into novel formulations and delivery systems to improve its therapeutic profile.

Pulmonary delivery is being explored as a promising alternative, particularly for treating lung infections like tuberculosis and nontuberculous mycobacteria (NTM) infections. technologypublisher.comnih.govfrontiersin.orgnih.gov Inhaled formulations aim to deliver this compound directly to the site of infection, achieving high drug concentrations in the lungs while minimizing systemic exposure and associated side effects. technologypublisher.comnih.govfrontiersin.orgnih.gov

Studies have investigated approaches such as dry powder inhalers and nebulized suspensions. technologypublisher.comnih.govnih.gov Research on nanostructured lipid carriers (NLCs), including mannosylated NLCs, has shown potential for targeted delivery to alveolar macrophages, where Mycobacterium tuberculosis resides. tandfonline.com These novel delivery systems have demonstrated improved lung bioavailability and sustained drug release in preclinical studies. nih.govtandfonline.com Further development and evaluation of these formulations are needed to optimize their efficacy and safety for clinical use. frontiersin.org

Expanded Applications in Oncology and Immunotherapy

Emerging research suggests potential new applications for this compound in oncology and as an adjuvant in immunotherapy. houstonmethodist.orgwilliamscancerinstitute.comsafetherapeutics.comnih.govaacrjournals.org Studies have indicated that this compound can enhance the efficacy of immune checkpoint inhibitors (ICB), such as anti-PD-1 and anti-CTLA-4 therapies, while also mitigating immune-related adverse events (irAEs). houstonmethodist.orgwilliamscancerinstitute.comsafetherapeutics.comnih.govaacrjournals.org

This compound's mechanism in this context appears to involve modulating T cell responses. It has been shown to promote E2F1 activation in CD8+ T cells, enhancing their cytotoxic activity and overcoming resistance to immunotherapy. williamscancerinstitute.comsafetherapeutics.comnih.govaacrjournals.org Additionally, this compound can suppress the expansion of pathogenic Th17 cells, which are implicated in irAEs. williamscancerinstitute.comsafetherapeutics.comaacrjournals.org

Preclinical studies, including those using organotypic tumor spheroids and various mouse models, have demonstrated that this compound in combination with ICB can lead to significant tumor reduction and even complete eradication in some cases, an outcome not achieved with ICB alone. nih.govaacrjournals.org this compound has also shown potential against specific cancer types like triple-negative breast cancer (TNBC) by inhibiting Wnt signaling and demonstrating additive effects when combined with chemotherapy agents like doxorubicin. unil.chfrontiersin.org Further research is needed to translate these promising preclinical findings into clinical applications and explore the full spectrum of this compound's potential in cancer treatment. williamscancerinstitute.comsafetherapeutics.comnih.gov

Further Exploration in Neurodegenerative and Autoimmune Diseases

This compound's immunomodulatory properties have led to its investigation in neurodegenerative and autoimmune diseases. wikipedia.orgplos.orglabmedica.comsciencedaily.com Its ability to inhibit the Kv1.3 potassium channel in effector memory T cells is considered a key mechanism for its potential in conditions like multiple sclerosis, rheumatoid arthritis, and type 1 diabetes, where these cells play a significant role. wikipedia.orgplos.orglabmedica.comsciencedaily.com

Recent preclinical studies have also explored this compound's potential in neurodegenerative disorders characterized by the accumulation of toxic proteins, such as Huntington's disease. ki.senih.gov Research in zebrafish and worm models of polyQ diseases suggests that this compound can reduce the toxicity of polyQ proteins and restore mitochondrial function, potentially through the activation of PPARγ. ki.senih.gov A limitation for neurological applications is this compound's limited efficiency in entering the nervous system, which is an area for future research to overcome. ki.se Further studies are required to fully understand the therapeutic potential and mechanisms of this compound in these complex diseases. plos.orgki.se

Combination Therapies and Synergistic Effects

The potential for synergistic effects when this compound is used in combination with other therapeutic agents is a key area of research. This is particularly relevant in the treatment of infectious diseases like MDR-TB and in the context of cancer therapy. houstonmethodist.orglabmedica.commdpi.comwilliamscancerinstitute.comaacrjournals.orgnih.govmedrxiv.orgmedrxiv.org

In tuberculosis, studies have investigated combinations of this compound with other anti-mycobacterial drugs such as moxifloxacin, bedaquiline, and pretomanid, showing additive or synergistic activity against M. tuberculosis strains in vitro and in some in vivo models. mdpi.comnih.gov For instance, combinations with rifampicin and isoniazid have shown synergistic inhibitory and bactericidal effects, particularly in biofilm-forming cultures. nih.gov

In oncology, the synergistic effects of this compound with immune checkpoint inhibitors have been highlighted, leading to enhanced tumor eradication. houstonmethodist.orgwilliamscancerinstitute.comaacrjournals.org this compound has also shown additive effects when combined with doxorubicin in preclinical models of triple-negative breast cancer and synergistic effects with standard-of-care drugs in drug-resistant multiple myeloma and chronic myeloid leukemia cell lines. unil.chfrontiersin.orgmedrxiv.orgmedrxiv.org Further research is needed to identify optimal drug combinations, understand the underlying mechanisms of synergy, and evaluate their clinical efficacy and safety. mdpi.comnih.govmedrxiv.orgmedrxiv.org

Biomarker Identification for Efficacy and Resistance

Identifying biomarkers that can predict patient response to this compound therapy and the emergence of resistance is a critical area for future research. Such biomarkers could help personalize treatment strategies, optimize drug combinations, and improve patient outcomes.

For infectious diseases like tuberculosis, identifying genetic mutations associated with this compound resistance (e.g., in Rv0678, pepQ, Rv1979c, and Rv1453) is a step towards developing rapid diagnostic tests to detect resistant strains. biorxiv.orgfrontiersin.orgresearchgate.netersnet.orgnih.govasm.org Further research is needed to validate these genetic markers and explore other potential biomarkers, such as those related to drug accumulation or metabolic pathways.

In oncology and immunotherapy, identifying biomarkers could help predict which patients are most likely to benefit from this compound-containing regimens and monitor for the development of resistance. Research into this compound's effects on immune cell populations (e.g., CD8+ T cells, Th17 cells, macrophages) and associated molecular pathways (e.g., E2F1-TCF1 pathway, Wnt signaling) may reveal potential biomarkers for efficacy and immune-related adverse events. williamscancerinstitute.comsafetherapeutics.comnih.govaacrjournals.orgunil.chfrontiersin.org Further studies are needed to identify and validate reliable biomarkers for various applications of this compound.

Q & A

Basic: What are the primary antimicrobial mechanisms of clofazimine, and how can researchers validate them in experimental settings?

Methodological Answer:
this compound disrupts bacterial membrane integrity by binding to microbial DNA and generating reactive oxygen species (ROS), leading to lipid peroxidation and cell death . To validate these mechanisms:

  • Gram-positive vs. Gram-negative testing : Use broth microdilution assays to confirm selective activity against Gram-positive bacteria (e.g., Mycobacterium tuberculosis) and assess resistance in Gram-negative species .
  • Lipid droplet modulation : Quantify lipid metabolism markers (e.g., adipophilin/ADRP, HSL) in infected macrophages via qPCR or Western blot to assess this compound's immunomodulatory effects .
  • ROS detection : Employ fluorescent probes (e.g., DCFH-DA) in bacterial cultures to measure ROS generation post-treatment .

Advanced: How can researchers reconcile contradictory findings on this compound’s efficacy in Wnt/β-catenin pathway inhibition across cell types (e.g., cancer vs. SARS-CoV-2 models)?

Methodological Answer:
Contradictions arise from cell-specific signaling crosstalk and experimental variables. To address this:

  • Dose-response profiling : Compare IC50 values across cell lines (e.g., TNBC vs. lung epithelial cells) using Wnt reporter assays (e.g., TOPFlash) .
  • Pathway crosstalk analysis : Perform RNA-seq or phosphoproteomics to identify compensatory pathways (e.g., NF-κB or MAPK) that may mask Wnt inhibition in certain contexts .
  • In vivo validation : Use transgenic mouse models (e.g., Wnt-driven tumors vs. COVID-19) to assess tissue-specific effects .

Basic: What experimental models are recommended for studying this compound resistance in Mycobacterium tuberculosis?

Methodological Answer:

  • In vitro selection assays : Serial passage M. tuberculosis in sub-inhibitory this compound concentrations to induce resistance; sequence rv0678 (a transcriptional regulator) to identify mutations .
  • Combinatorial testing : Pair this compound with bedaquiline in checkerboard assays to detect cross-resistance patterns .
  • Mouse efficacy studies : Administer this compound in MDR-TB-infected mice and monitor bacterial load reduction in lungs via CFU counts .

Advanced: How can genomic and in silico approaches improve this compound resistance prediction in clinical isolates?

Methodological Answer:

  • Whole-genome sequencing (WGS) : Analyze mutations in rv0678, rv1979c, and rv2535c in clinical isolates using tools like Mykrobe or TB-Profiler .
  • Machine learning models : Train algorithms on in vitro resistance data (MICs) and genomic variants to predict clinical outcomes .
  • Structural modeling : Use homology modeling (e.g., AlphaFold) to predict how rv0678 mutations alter this compound-DNA binding .

Basic: What safety protocols are critical when handling this compound in laboratory settings?

Methodological Answer:

  • PPE requirements : Use nitrile gloves (tested for permeation resistance) and N95 masks to prevent dermal/airway exposure .
  • Ventilation : Store and handle this compound in fume hoods with negative pressure to avoid aerosolization .
  • Waste disposal : Deactivate contaminated materials with 10% sodium hypochlorite before autoclaving .

Advanced: How should researchers design combination therapy trials for this compound in MDR-TB or NTM infections?

Methodological Answer:

  • Synergy screening : Use fractional inhibitory concentration (FIC) indices to test this compound with bedaquiline, linezolid, or pretomanid .
  • Endpoint selection : Define primary endpoints as culture conversion at 6 months and secondary endpoints as relapse rates at 12 months .
  • Pharmacokinetic (PK) monitoring : Measure this compound’s tissue accumulation via LC-MS/MS in plasma and lung biopsies to optimize dosing .

Basic: What methods are used to quantify this compound’s immunomodulatory effects in host cells?

Methodological Answer:

  • Cytokine profiling : Use ELISA or multiplex assays to measure IFN-γ, IL-6, and TNF-α levels in this compound-treated macrophages .
  • Lipid droplet imaging : Stain lipid droplets with Nile Red and quantify fluorescence intensity in M. leprae-infected THP-1 cells .
  • Flow cytometry : Assess macrophage polarization (M1 vs. M2) via surface markers (CD80/CD206) post-treatment .

Advanced: What strategies mitigate variability in this compound’s anti-inflammatory efficacy across preclinical COVID-19 models?

Methodological Answer:

  • Disease stage-specific dosing : Administer this compound during early infection (viral replication phase) vs. late hyperinflammation in hamster models .
  • Host-pathogen co-cultures : Use human lung organoids infected with SARS-CoV-2 to simulate tissue-level responses .
  • Biomarker correlation : Link IL-6 suppression and viral load reduction in longitudinal studies to identify responder subgroups .

Basic: How is this compound’s pharmacokinetic profile characterized in animal models?

Methodological Answer:

  • Tissue distribution studies : Administer radiolabeled this compound to mice and measure accumulation in lungs, liver, and adipose tissue via scintillation counting .
  • Half-life determination : Calculate elimination half-life (t1/2) using non-compartmental analysis of plasma concentration-time curves .

Advanced: What computational tools are available to model this compound’s interaction with host lipid pathways?

Methodological Answer:

  • Molecular docking : Simulate this compound binding to lipid metabolism proteins (e.g., HSL) using AutoDock Vina .
  • Network pharmacology : Construct protein-protein interaction networks (e.g., STRING) to map this compound’s multi-target effects .

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Please be aware that all articles and product information presented on BenchChem are intended solely for informational purposes. The products available for purchase on BenchChem are specifically designed for in-vitro studies, which are conducted outside of living organisms. In-vitro studies, derived from the Latin term "in glass," involve experiments performed in controlled laboratory settings using cells or tissues. It is important to note that these products are not categorized as medicines or drugs, and they have not received approval from the FDA for the prevention, treatment, or cure of any medical condition, ailment, or disease. We must emphasize that any form of bodily introduction of these products into humans or animals is strictly prohibited by law. It is essential to adhere to these guidelines to ensure compliance with legal and ethical standards in research and experimentation.