molecular formula C12H13N3O3S B1672616 Fexinidazole CAS No. 59729-37-2

Fexinidazole

Cat. No.: B1672616
CAS No.: 59729-37-2
M. Wt: 279.32 g/mol
InChI Key: MIWWSGDADVMLTG-UHFFFAOYSA-N
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Description

Fexinidazole is an orally administered 5-nitroimidazole prodrug developed for treating Human African Trypanosomiasis (HAT) and investigated for visceral leishmaniasis (VL) and Chagas disease. Discovered in the 1970s and revitalized by the Drugs for Neglected Diseases initiative (DNDi), it undergoes hepatic metabolism to two active metabolites: this compound sulfoxide (M1) and this compound sulfone (M2). These metabolites exhibit trypanocidal and leishmanicidal activities comparable to the parent compound .

This compound demonstrates broad-spectrum activity against Trypanosoma brucei (both gambiense and rhodesiense), curing acute and chronic murine models at 100 mg/kg twice daily for 5 days . It achieves brain concentrations exceeding IC50 values, critical for treating stage 2 HAT (CNS involvement) . Despite mutagenicity in bacterial Ames tests, it lacks genotoxicity in mammalian assays, enabling clinical development .

Properties

IUPAC Name

1-methyl-2-[(4-methylsulfanylphenoxy)methyl]-5-nitroimidazole
Source PubChem
URL https://pubchem.ncbi.nlm.nih.gov
Description Data deposited in or computed by PubChem

InChI

InChI=1S/C12H13N3O3S/c1-14-11(13-7-12(14)15(16)17)8-18-9-3-5-10(19-2)6-4-9/h3-7H,8H2,1-2H3
Source PubChem
URL https://pubchem.ncbi.nlm.nih.gov
Description Data deposited in or computed by PubChem

InChI Key

MIWWSGDADVMLTG-UHFFFAOYSA-N
Source PubChem
URL https://pubchem.ncbi.nlm.nih.gov
Description Data deposited in or computed by PubChem

Canonical SMILES

CN1C(=CN=C1COC2=CC=C(C=C2)SC)[N+](=O)[O-]
Source PubChem
URL https://pubchem.ncbi.nlm.nih.gov
Description Data deposited in or computed by PubChem

Molecular Formula

C12H13N3O3S
Source PubChem
URL https://pubchem.ncbi.nlm.nih.gov
Description Data deposited in or computed by PubChem

DSSTOX Substance ID

DTXSID00208448
Record name Fexinidazole
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Molecular Weight

279.32 g/mol
Source PubChem
URL https://pubchem.ncbi.nlm.nih.gov
Description Data deposited in or computed by PubChem

Solubility

Practically insoluble
Record name Fexinidazole
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CAS No.

59729-37-2
Record name Fexinidazole
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Record name Fexinidazole [USAN:INN]
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Record name Fexinidazole
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Record name Fexinidazole
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Record name 1-methyl-2-[(4-methylsulfanylphenoxy)methyl]-5-nitroimidazole
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Record name FEXINIDAZOLE
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Preparation Methods

Conventional Synthesis of Fexinidazole

The primary synthetic route to this compound, as developed by Hoechst AG (now Sanofi) and later optimized for industrial production, involves a sequence of methylation, hydroxymethylation, chlorination, and coupling reactions.

Methylation of Nitroimidazole

The synthesis begins with the methylation of 5-nitroimidazole (2.1) using dimethyl sulfate in dioxane. This step introduces a methyl group at the N-1 position, yielding 1-methyl-5-nitroimidazole (2.2) with an 82% yield. The reaction proceeds under reflux conditions, with careful control of stoichiometry to minimize byproducts.

Hydroxymethylation

The methylated intermediate (2.2) undergoes hydroxymethylation via treatment with formaldehyde in dimethyl sulfoxide (DMSO). This step introduces a hydroxymethyl group at the C-2 position, producing 2-hydroxymethyl-1-methyl-5-nitroimidazole (2.3) in 62% yield. The use of DMSO as a solvent enhances electrophilic substitution efficiency.

Chlorination

The hydroxymethyl derivative (2.3) is converted to 2-chloromethyl-1-methyl-5-nitroimidazole (2.4) using thionyl chloride (SOCl₂) in chloroform. This step achieves near-quantitative conversion under mild conditions, though the isolated yield is typically limited by purification losses.

Coupling with 4-Methylmercaptophenol

The chlorinated intermediate (2.4) is coupled with 4-methylmercaptophenol (2.5) in the presence of potassium carbonate (K₂CO₃) in acetone. This nucleophilic substitution reaction forms the thioether linkage, yielding this compound hydrochloride (2.6). Neutralization with aqueous ammonia provides the free base, with an overall yield of 65% over the final three steps.

Table 1: Key Steps in Conventional this compound Synthesis
Step Reaction Reagents/Conditions Yield
1 Methylation Dimethyl sulfate, dioxane, reflux 82%
2 Hydroxymethylation Formaldehyde, DMSO, 60°C 62%
3 Chlorination SOCl₂, chloroform, rt >90%
4 Coupling & Neutralization K₂CO₃, acetone; NH₃(aq) 65%*

*Overall yield for steps 3–5.

Isotopic Labeling Techniques

Isotopic labeling of this compound and its metabolites is essential for pharmacokinetic and metabolic studies. Two primary approaches—deuterium (²H) and carbon-14 (¹⁴C) labeling—have been developed.

Deuterium-Labeled this compound

Deuterium incorporation is achieved via base-catalyzed hydrogen-deuterium exchange. Using deuterated solvents (e.g., D₂O) and alkaline conditions, selective deuteration at the methylthio group’s sulfur-adjacent carbon is achieved. This method produces ²H-labeled this compound, sulfoxide, and sulfone metabolites for use as internal standards in liquid chromatography-mass spectrometry (LC-MS).

Carbon-14-Labeled this compound

The ¹⁴C-labeled variant is synthesized via a five-step procedure starting from potassium [¹⁴C]cyanide. The radiolabel is introduced early in the synthetic pathway, ensuring uniform distribution in the final molecule. This labeled compound facilitates absorption, distribution, metabolism, and excretion (ADME) studies.

Optimization of Synthetic Conditions

Solvent and Catalyst Selection

The choice of solvent significantly impacts reaction efficiency. For example, using DMSO in hydroxymethylation enhances electrophilic reactivity compared to polar aprotic solvents like DMF. Similarly, acetone in the coupling step minimizes side reactions compared to higher-polarity solvents.

Temperature Control

Exothermic reactions, such as chlorination with SOCl₂, require strict temperature control (0–5°C) to prevent degradation of the chloromethyl intermediate.

Analytical Characterization

Nuclear Magnetic Resonance (NMR)

¹H and ¹³C NMR spectra confirm structural integrity. Key signals include:

  • ¹H NMR (DMSO- d₆) : δ 2.45 (s, 3H, SCH₃), 3.85 (s, 3H, N-CH₃), 4.75 (s, 2H, CH₂S).
  • ¹³C NMR : δ 12.5 (SCH₃), 33.8 (N-CH₃), 68.2 (CH₂S).

Liquid Chromatography-Mass Spectrometry (LC-MS)

LC-MS methods validated for this compound and its metabolites show:

  • This compound : m/z 283.1 [M+H]⁺.
  • Sulfoxide Metabolite (M1) : m/z 299.1 [M+H]⁺.
  • Sulfone Metabolite (M2) : m/z 315.1 [M+H]⁺.

Comparative Analysis of Synthetic Routes

Table 2: Isotopic vs. Conventional Synthesis
Parameter Conventional Route ¹⁴C-Labeled Route
Starting Material Nitroimidazole K[¹⁴C]CN
Key Step Coupling Radiolabeling
Yield 65% (overall) 40–50%*
Application Bulk Production ADME Studies

*Estimated from multi-step radiochemical synthesis.

Chemical Reactions Analysis

Types of Reactions: Fexinidazole undergoes several types of chemical reactions, including:

Common Reagents and Conditions:

Major Products:

Scientific Research Applications

Human African Trypanosomiasis

  • Efficacy Against Trypanosoma brucei gambiense :
    • Fexinidazole has shown high efficacy in treating early-stage gambiense HAT. Clinical trials demonstrated a cure rate exceeding 90% in patients treated with oral this compound .
    • The drug is administered as a 400 mg tablet once daily for 10 days, making it a convenient treatment option compared to previous therapies that required intravenous administration.
  • Efficacy Against Trypanosoma brucei rhodesiense :
    • Recent studies have confirmed that this compound is effective for both first-stage and second-stage rhodesiense HAT. The European Medicines Agency's positive opinion supports its use in children over six years old and adults weighing at least 20 kg .

Safety Profile

This compound has been reported to have a favorable safety profile. In clinical trials, adverse effects were generally mild and manageable, with no severe long-term complications noted . This contrasts sharply with earlier treatments such as melarsoprol, which are associated with significant toxicity.

Comparative Efficacy Data

Stage of InfectionTreatment RegimenCure Rate (%)Notes
First StageThis compound (10 days)>90Oral administration; well-tolerated
Second StageThis compound (10 days)~91Effective against CNS involvement
Previous TreatmentsVarious (IV or IM)<80Often associated with severe side effects

Case Studies

  • Clinical Trial in Democratic Republic of the Congo :
    • A pivotal study involved over 300 patients with early-stage gambiense HAT. Results indicated that this compound was not only effective but also significantly improved patient adherence due to its oral formulation .
  • Pediatric Use :
    • A separate trial focused on children demonstrated that this compound is safe and effective, providing a new treatment avenue for younger populations affected by HAT .
  • Long-term Follow-up :
    • Patients treated with this compound showed sustained remission without relapse over a two-year follow-up period, reinforcing its potential as a first-line treatment option .

Mechanism of Action

Fexinidazole exerts its effects by being metabolized into active metabolites that interfere with the parasite’s DNA synthesis. The compound is believed to activate certain enzymes within the parasites, leading to the production of reactive oxygen species that damage the parasite’s cellular structures. This ultimately results in the death of the parasite .

Comparison with Similar Compounds

Pharmacokinetics and Metabolism

Fexinidazole’s pharmacokinetic profile distinguishes it from other nitroimidazoles:

  • Rapid absorption : Peak plasma concentrations (Tmax) occur within 0.25–4 hours, with a half-life of 10–16 hours .
  • Metabolite-driven efficacy : Sulfoxide and sulfone metabolites contribute to cumulative exposure, enhancing in vivo efficacy compared to single-entity drugs like benznidazole .
  • Food interaction : Co-administration with high-fat meals increases bioavailability 3-fold, a critical consideration for patient compliance .

Table 1: Pharmacokinetic Comparison of this compound and Metabolites

Parameter This compound This compound Sulfoxide (M1) This compound Sulfone (M2)
Free fraction in plasma 2% 60% 43%
IC50 (HAT) 1.0 μM 0.4–0.8 μM 0.4–0.8 μM
CNS penetration High High High
Half-life (h) 10–16 10–16 10–16

Sources:

In Vitro and In Vivo Efficacy

Against Trypanosoma cruzi (Chagas disease):

  • This compound sulfone achieves >98% parasite clearance in acute murine models at 50 mg/kg twice daily, outperforming benznidazole and nifurtimox .
  • However, phase II trials for Chagas were halted due to tolerability issues, highlighting a trade-off between efficacy and safety .

Against Leishmania spp.:

  • This compound sulfone and sulfoxide show EC50 values of 0.23–4.4 μM against L. donovani axenic amastigotes, comparable to miltefosine but dependent on nitroreductase activation .
  • In murine VL models, 200 mg/kg/day for 5 days reduces parasite burden by 98.4%, mirroring miltefosine’s efficacy .

Table 2: In Vitro Potency Against Key Pathogens

Compound T. brucei IC50 L. donovani EC50 H. pylori MIC
This compound 1.0 μM >50 μM 5–10 μM
This compound sulfoxide 0.4–0.8 μM 0.23–3.2 μM 2.5 μM
This compound sulfone 0.4–0.8 μM 0.23–3.2 μM 2.5 μM
Miltefosine N/A 4.4 μM N/A
Benznidazole N/A N/A N/A

Sources:

Mechanism of Action (MoA) and Resistance
  • Nitroreductase dependence: this compound’s metabolites require nitroreductase for activation, unlike miltefosine or alkyl phospholipids . Overexpression of nitroreductase in L. donovani increases susceptibility 15-fold .
  • Cytocidal vs. cytostatic : this compound sulfone and sulfoxide kill parasites within 30 hours, unlike cytostatic drugs (e.g., azoles), which require prolonged immune support .
Clinical Performance vs. Competitors

Table 3: Clinical Outcomes in Key Indications

Indication Compound Cure Rate (Preclinical) Clinical Outcome
HAT (Stage 2) This compound 100% (murine) Approved (2018)
Chagas (Acute) This compound 100% (murine) Phase II halted (tolerability)
Visceral Leish. This compound 98.4% (murine) Phase II relapse observed
Visceral Leish. Miltefosine >95% (murine) Approved (oral)

Sources:

Biological Activity

Fexinidazole is a novel 5-nitroimidazole compound that has garnered significant attention for its potential use in treating human African trypanosomiasis (HAT), also known as sleeping sickness. This disease, caused by the protozoan parasites Trypanosoma brucei gambiense and Trypanosoma brucei rhodesiense, poses a considerable health risk in sub-Saharan Africa. This compound is unique as it is the first oral treatment approved for HAT, providing a much-needed alternative to existing therapies that often require intravenous administration.

This compound acts as a prodrug, requiring metabolic activation to exert its therapeutic effects. Upon administration, it undergoes two-electron reduction to form two primary active metabolites: this compound sulfoxide and this compound sulfone. These metabolites are responsible for the compound's trypanocidal activity against various strains of T. brucei.

In Vitro and In Vivo Efficacy

Research has demonstrated the efficacy of this compound and its metabolites in both in vitro and in vivo settings. The following table summarizes key findings regarding the biological activity of this compound against T. brucei:

Study Formulation IC50 (μM) In Vivo Efficacy Notes
This compound0.7 - 3.3Effective at 100 mg/kg/day for 4 daysCures acute HAT
This compound0.7 - 3.3Effective at 200 mg/kg/day for 5 daysCures chronic HAT
Sulfoxide1.6Similar efficacy as parent compoundComparable to eflornithine
Sulfone1.8Similar efficacy as parent compoundComparable to nifurtimox

Pharmacokinetics

This compound exhibits favorable pharmacokinetic properties, characterized by rapid absorption and metabolism. Key pharmacokinetic parameters after oral administration in mice include:

  • Cmax :
    • This compound: 500 ng/mL
    • Sulfoxide: 14171 ng/mL
    • Sulfone: 13651 ng/mL
  • AUC (0-24 hours) :
    • This compound: 424 h.ng/mL
    • Sulfoxide: 45031 h.ng/mL
    • Sulfone: 96286 h.ng/mL

These data indicate that the metabolites contribute significantly to the therapeutic effect observed in vivo, with prolonged exposure enhancing efficacy against T. brucei.

Clinical Trials

This compound has undergone extensive clinical trials, demonstrating its safety and effectiveness in treating HAT. The pivotal study included patients with both early and late-stage disease, showing a high cure rate and minimal side effects compared to traditional therapies.

Comparative Studies

In comparative studies against established treatments like eflornithine and nifurtimox, this compound has shown comparable efficacy but with the added benefit of oral administration, which improves patient compliance and reduces healthcare costs associated with intravenous therapies.

Q & A

Basic Research Questions

Q. What methodologies are recommended for designing preclinical studies to evaluate Fexinidazole’s efficacy against African trypanosomiasis?

  • Use validated animal models like the GVR35 chronic murine model, which correlates plasma concentrations of this compound’s sulfone metabolite (M2) with curative outcomes . Ensure pharmacokinetic (PK) parameters (e.g., time to steady state, bioavailability) align with human trial data. Include control groups for comparison and measure M2 levels in cerebrospinal fluid to assess CNS penetration .

Q. How should researchers address food interaction effects in this compound dosing studies?

  • Conduct randomized crossover trials comparing bioavailability under fasted vs. fed conditions (e.g., high-fat vs. carbohydrate-rich meals). Use PK modeling to simulate absorption rates and adjust dosing regimens. For example, Study Protocol 2 (NCT01340157) demonstrated that food type significantly impacts bioavailability, requiring adjustments in clinical protocols .

Q. What strategies ensure reproducibility in this compound pharmacokinetic studies?

  • Standardize protocols for blood sampling, metabolite quantification (e.g., LC-MS/MS), and data reporting. Include detailed descriptions of renal clearance rates, free drug fractions, and inter-subject variability in supplementary materials. Reference in vitro data (e.g., protein binding assays) to validate human findings .

Advanced Research Questions

Q. How can population pharmacokinetic modeling optimize this compound dosing in heterogeneous populations?

  • Integrate data from Phase I trials (e.g., Study Protocol 3, NCT0148370) to build nonlinear mixed-effects models. Incorporate covariates like body weight, hepatic function, and genetic polymorphisms in CYP450 enzymes. Validate simulations against murine efficacy thresholds (e.g., M2 >10,000 ng/mL for 24h) .

Q. What analytical frameworks resolve contradictions between preclinical and clinical efficacy data for this compound?

  • Apply meta-analytical techniques to compare murine and human PK/PD relationships. For discrepancies in CNS penetration, use compartmental modeling to adjust for blood-brain barrier variability. Cross-reference safety data (e.g., Holter ECG results) to identify confounders like cardiac toxicity .

Q. How should researchers design studies to compare this compound with nifurtimox-eflornithine combination therapy?

  • Use adaptive trial designs with primary endpoints like parasite clearance time and relapse rates. Stratify participants by disease stage (early vs. late) and monitor adverse events (AEs) via blinded safety review committees. Leverage literature review methodologies (e.g., PubMed search filters) to identify comparator trial protocols .

Retrosynthesis Analysis

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Feasible Synthetic Routes

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