molecular formula C8H11N3O3S B1674443 Lamivudine CAS No. 134678-17-4

Lamivudine

Cat. No.: B1674443
CAS No.: 134678-17-4
M. Wt: 229.26 g/mol
InChI Key: JTEGQNOMFQHVDC-NKWVEPMBSA-N
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Description

Lamivudine, a nucleoside reverse transcriptase inhibitor (NRTI), is a cornerstone antiviral agent used in the treatment of HIV-1 infection and chronic hepatitis B virus (HBV). It functions by competitively inhibiting viral reverse transcriptase, thereby terminating DNA chain elongation and suppressing viral replication . Approved by the FDA in 1995, this compound is characterized by its oral bioavailability (>80%), low protein binding (~40%), and renal excretion as the primary elimination pathway .

Properties

IUPAC Name

4-amino-1-[(2R,5S)-2-(hydroxymethyl)-1,3-oxathiolan-5-yl]pyrimidin-2-one
Source PubChem
URL https://pubchem.ncbi.nlm.nih.gov
Description Data deposited in or computed by PubChem

InChI

InChI=1S/C8H11N3O3S/c9-5-1-2-11(8(13)10-5)6-4-15-7(3-12)14-6/h1-2,6-7,12H,3-4H2,(H2,9,10,13)/t6-,7+/m0/s1
Source PubChem
URL https://pubchem.ncbi.nlm.nih.gov
Description Data deposited in or computed by PubChem

InChI Key

JTEGQNOMFQHVDC-NKWVEPMBSA-N
Source PubChem
URL https://pubchem.ncbi.nlm.nih.gov
Description Data deposited in or computed by PubChem

Canonical SMILES

C1C(OC(S1)CO)N2C=CC(=NC2=O)N
Source PubChem
URL https://pubchem.ncbi.nlm.nih.gov
Description Data deposited in or computed by PubChem

Isomeric SMILES

C1[C@H](O[C@H](S1)CO)N2C=CC(=NC2=O)N
Source PubChem
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Molecular Formula

C8H11N3O3S
Source PubChem
URL https://pubchem.ncbi.nlm.nih.gov
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DSSTOX Substance ID

DTXSID7023194
Record name Lamivudine
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Molecular Weight

229.26 g/mol
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Physical Description

Solid
Record name Lamivudine
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Solubility

In water, 70,000 mg/L @ 20 °C, 2.76e+00 g/L
Record name Lamivudine
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Record name Lamivudine
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Vapor Pressure

8.3X10-16 mm Hg @ 25 °C /Estimated/
Record name LAMIVUDINE
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Color/Form

Crystals from boiling ethanol

CAS No.

134678-17-4
Record name Lamivudine
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Melting Point

160-162 °C, 160 - 162 °C
Record name Lamivudine
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Record name Lamivudine
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Description The Human Metabolome Database (HMDB) is a freely available electronic database containing detailed information about small molecule metabolites found in the human body.
Explanation HMDB is offered to the public as a freely available resource. Use and re-distribution of the data, in whole or in part, for commercial purposes requires explicit permission of the authors and explicit acknowledgment of the source material (HMDB) and the original publication (see the HMDB citing page). We ask that users who download significant portions of the database cite the HMDB paper in any resulting publications.

Preparation Methods

Historical Development and Significance of Lamivudine Synthesis

The discovery of this compound in the early 1990s marked a breakthrough in antiviral therapy, with its β-L-enantiomer exhibiting potent activity against retroviruses. Early synthetic routes faced challenges in stereochemical control, often yielding racemic mixtures requiring costly separations. Modern methods, such as those disclosed in patents KR20110081383A and US20100063283A1, address these limitations through innovative use of chiral auxiliaries and crystallization-based purification. These advancements have enabled large-scale production with enantiomeric excess exceeding 99.8%, meeting stringent pharmaceutical standards.

Reduction and Salt Formation Method

Reaction Mechanism and Stepwise Procedure

The method described in KR20110081383A involves a two-step process starting with the reduction of a 1,3-oxathiolane intermediate followed by salt formation and neutralization:

  • Reduction of 1,3-Oxathiolane (III):
    The 1,3-oxathiolane derivative is reduced using sodium borohydride (NaBH₄) in a polar solvent system (e.g., ethanol-water). This step selectively reduces the carbonyl group to a hydroxymethyl moiety, establishing the R-configuration at the 2-position. The reaction is conducted at 15–20°C for 4 hours, achieving near-quantitative conversion.

  • Salt Formation with Succinic Acid:
    The reduced product is treated with 1.05 equivalents of succinic acid in aqueous ethanol at 80°C, forming this compound succinate. This crystalline salt is isolated in 92% yield via cooling crystallization, leveraging succinic acid’s ability to selectively precipitate the target enantiomer.

  • Neutralization to this compound (I):
    The succinate salt is neutralized using tertiary amines (e.g., triethylamine) or inorganic bases (e.g., sodium carbonate) in ethanol. After filtration and vacuum drying, this compound is obtained with a purity >99% by HPLC.

Key Process Parameters

  • Solvent System: Ethanol-water mixtures (5:1 v/v) optimize solubility and crystallization.
  • Temperature Control: Maintaining 15–20°C during reduction prevents epimerization.
  • Stoichiometry: A 10% excess of succinic acid ensures complete salt formation.

Table 1: Representative Data from KR20110081383A

Parameter Value
Starting Material 1.0 mol (381.5 g)
NaBH₄ Equivalents 2.0 mol
Succinic Acid Equivalents 1.05 mol
Yield (this compound) 312.8 g (92%)
Purity (HPLC) >99%

Stereoselective Glycosylation Using Chiral Auxiliaries

Chiral Induction and Diastereomer Separation

The US20100063283A1 patent outlines a stereoselective route employing L-menthol as a chiral auxiliary to enforce the desired R-configuration:

  • Synthesis of Chiral Intermediate (I):
    L-Menthol is acylated with triphosgene to form L-menthol chloroformate, which condenses with a protected glycerol derivative. Subsequent oxidation and cyclization yield a 1,3-oxathiolane intermediate with fixed stereochemistry.

  • Glycosylation with Cytosine:
    The chiral intermediate reacts with N⁴-acetylcytosine in toluene at 50°C, facilitated by trimethyliodosilane. This step forms a 1',3'-oxathiolane-cytosine conjugate as a mixture of diastereomers.

  • Recrystallization in Ethanol:
    Diastereomers are separated via recrystallization from ethanol, yielding the 2R,5S-isomer in 75% enantiomeric excess. Further purification through p-nitrobenzoate salt formation elevates purity to >99.8%.

Advantages of the Stereoselective Approach

  • Optical Purity: Chiral HPLC confirms <0.2% of the undesired enantiomer.
  • Cost Efficiency: Trimethyliodosilane replaces expensive Lewis acids, reducing material costs by 40%.
  • Scalability: The process operates under mild conditions (10–80°C), suitable for multi-ton production.

Table 2: Performance Metrics from US20100063283A1

Metric Value
Glycosylation Yield 75%
Recrystallization Purity 99.8% (2R,5S isomer)
Final Assay (HPLC) >99%
Enantiomeric Excess <0.2% undesired isomer

Comparative Analysis of Synthetic Methods

Yield and Efficiency

  • Reduction-Salt Method: Higher overall yield (92%) but requires careful pH control during neutralization.
  • Stereoselective Method: Lower intermediate yield (75%) but superior enantiomeric purity, critical for pharmaceutical efficacy.

Industrial Applicability

  • Cost: The stereoselective method’s use of L-menthol increases raw material costs but avoids costly chromatographic separations.
  • Environmental Impact: Ethanol-water systems in both methods align with green chemistry principles, minimizing hazardous waste.

Chemical Reactions Analysis

Types of Reactions: Lamivudine undergoes various chemical reactions, including:

Common Reagents and Conditions:

Major Products: The major products formed from these reactions include sulfoxides, sulfones, dihydro derivatives, and various substituted analogues .

Scientific Research Applications

Treatment of HIV-1

Mechanism of Action
Lamivudine exerts its antiviral effects by inhibiting the reverse transcriptase enzyme, which is crucial for the replication of HIV. This inhibition leads to a reduction in viral load and an increase in CD4+ cell counts, ultimately improving patient quality of life and longevity.

Clinical Studies
Recent studies have demonstrated that this compound remains a cornerstone in HIV treatment regimens. For instance, the DYAD study showed that switching to a combination therapy of dolutegravir and this compound was noninferior to traditional multi-drug regimens in maintaining virologic suppression among adults with HIV. Additionally, this compound is often combined with other antiretrovirals to prevent drug resistance, particularly the M184V mutation associated with rapid viral replication.

Treatment of Hepatitis B

Efficacy in Chronic Hepatitis B
this compound has been shown to be effective in treating chronic hepatitis B. A placebo-controlled study indicated that 63% of patients receiving this compound achieved a complete response at week 24, compared to only 6% in the placebo group. Furthermore, this compound is recognized for its safety profile and efficacy in improving liver histology among patients with HBV.

Infantile Hepatitis B Case Study
A notable case report documented the successful treatment of an infant with hepatitis B using this compound. The early initiation of therapy resulted in significant clinical improvement and may inform future clinical guidelines for managing hepatitis B in infants.

Prophylactic Use

Preventing HBV Reactivation
this compound is also employed prophylactically to prevent HBV reactivation in patients undergoing immunosuppressive therapy or chemotherapy. A meta-analysis revealed that this compound significantly reduces the incidence of HBV reactivation but is associated with a higher risk of developing drug resistance compared to other antiviral agents like entecavir.

Combination Therapies

Innovative Regimens
this compound's role extends into combination therapies, where it is paired with other drugs to enhance efficacy and minimize side effects. For example, studies have shown that combining this compound with dolutegravir maintains high efficacy while reducing the complexity of treatment regimens. This approach is particularly beneficial for treatment-naive patients.

Data Table: Summary of Clinical Applications

ApplicationIndicationEfficacy EvidenceNotable Studies/Findings
HIV-1 Treatment Antiretroviral therapySignificant reduction in viral loadDYAD Study: Noninferiority to multi-drug regimens
Chronic Hepatitis B Treatment Monotherapy or combination therapy63% response rate at week 24 vs. placebo (6%)Placebo-controlled study
Prophylactic Use Preventing HBV reactivationHigher incidence of resistance compared to entecavirMeta-analysis: 18.08% reactivation rate vs. entecavir (4.82%)
Infantile Hepatitis B Early interventionSafe and effective treatmentCase report on infant treatment success

Mechanism of Action

Lamivudine exerts its antiviral effects by inhibiting the reverse transcriptase enzyme. Once inside the cell, this compound is phosphorylated to its active triphosphate form, which competes with natural nucleotides for incorporation into the viral DNA. This incorporation results in chain termination, effectively halting viral DNA synthesis and replication .

Comparison with Similar Compounds

Lamivudine is structurally and functionally analogous to other cytidine analogs, including emtricitabine , entecavir , and telbivudine . Below is a detailed comparison based on pharmacological properties, efficacy, and resistance profiles.

Structural and Pharmacokinetic Comparison

Compound Structural Difference Protein Binding Elimination Half-Life Key Interactions
This compound Cytidine analog with 3'-thiacytidine ~40% 5–7 hours Reduced clearance with efavirenz
Emtricitabine 5-fluoro substitution on pyrimidine ring <7% ~10 hours No significant drug interactions
Entecavir Carbocyclic guanosine analog ~13% 128–149 hours Minimal interaction with NRTIs
Telbivudine Thymidine analog with L-configuration <5% 40–49 hours No CYP450 interactions

Key Notes:

  • Emtricitabine : Shares near-identical resistance profiles with this compound but exhibits longer half-life and lower protein binding , enhancing tissue penetration .
  • Entecavir : Superior HBV suppression due to higher genetic barrier to resistance (requires this compound-resistant mutations for entecavir resistance) .

Clinical Efficacy in HBV and HIV

HBV Treatment
  • This compound vs. Entecavir : A meta-analysis of 21 studies (1,548 patients) found this compound achieved 88% HBV DNA suppression at 24 weeks, but resistance rates reached 70% after 5 years , compared to <1% for entecavir .
  • This compound vs. Telbivudine : Telbivudine demonstrated higher rates of HBeAg seroconversion (30% vs. 22% at 52 weeks) but similar resistance challenges .
HIV Treatment
  • This compound vs. However, emtricitabine is preferred in once-daily regimens due to its pharmacokinetic profile .

Critical Findings :

Biological Activity

Pharmacokinetics

The pharmacokinetic profile of this compound includes:

  • Absorption : Rapidly absorbed after oral administration with an absolute bioavailability of approximately 86%.
  • Distribution : The apparent volume of distribution is about 1.3 L/kg, independent of dose and body weight.
  • Protein Binding : Less than 36% binds to plasma proteins.
  • Metabolism : this compound undergoes minimal metabolism (about 5.2%) and is primarily excreted unchanged via renal pathways.
  • Half-Life : The elimination half-life ranges from 5 to 7 hours.

HIV Treatment

This compound has been shown to be effective in reducing HIV viral load and increasing CD4+ cell counts. In combination therapies, it has demonstrated non-inferiority compared to other NRTIs such as emtricitabine. For instance, studies indicate that this compound combined with dolutegravir shows comparable efficacy to three-drug regimens in ART-naïve individuals.

Hepatitis B Treatment

In chronic hepatitis B patients, this compound has shown significant histological improvement. A one-year trial involving 358 patients indicated that those receiving 100 mg daily exhibited a substantial reduction in necroinflammatory activity and fibrosis progression compared to placebo groups. The study reported a 98% reduction in HBV DNA levels at week 52 and a seroconversion rate of 16% for HBeAg.

Case Studies

  • HIV Cohort Study : A cohort analysis from the ATHENA study highlighted that patients receiving this compound had a higher risk of virological failure compared to those on efavirenz-based regimens. This indicates the need for careful monitoring and possible adjustments in therapy for patients on this compound.
  • Chronic Hepatitis B Trial : In a randomized trial comparing different dosages of this compound, the 100 mg group showed the highest rates of sustained normalization of alanine aminotransferase levels (72%) and effective suppression of HBV DNA.

Safety Profile

This compound is generally well-tolerated with a low incidence of severe adverse effects. Common side effects include headache, fatigue, and gastrointestinal disturbances. Long-term use can lead to the development of resistance mutations such as M184V in HIV patients, underscoring the importance of combination therapy to mitigate this risk.

Q & A

Basic Research Questions

Q. What are the standard methodological approaches for quantifying lamivudine in pharmaceutical formulations, and how are these methods validated?

  • Answer : Reverse-phase HPLC with UV detection is widely used for simultaneous quantification of this compound and co-administered drugs (e.g., zidovudine). Validation includes robustness testing under variations in mobile phase composition (e.g., ±2% acetonitrile), pH (±0.2 units), and flow rate (±0.1 mL/min). Acceptable precision requires %RSD <2% for replicate analyses. For example, a validated method achieved 100.02% recovery for this compound in marketed tablets, ensuring reliability for pharmacokinetic or stability studies .

Q. What safety protocols should researchers follow when handling this compound in laboratory settings?

  • Answer : this compound is classified under GHS as a Category 2 specific target organ toxicant (repeated exposure). Mandatory precautions include:
  • Use of PPE (gloves, lab coats, and eye protection) to avoid dermal contact .
  • Conducting experiments in well-ventilated areas or fume hoods to prevent inhalation of aerosols .
  • Implementing rigorous waste disposal protocols for contaminated materials. Safety data sheets (SDS) must be reviewed prior to experimental design .

Advanced Research Questions

Q. How can researchers design experiments to evaluate this compound’s pharmacokinetic alterations in post-bariatric surgery populations?

  • Answer : Longitudinal pharmacokinetic (PK) studies should compare pre- and post-surgery plasma concentrations using high-performance liquid chromatography-tandem mass spectrometry (HPLC-MS/MS). Key considerations include:
  • Sampling at multiple time points (e.g., 0, 1, 2, 4, 8, 12 hours post-dose) to capture absorption changes due to altered gastrointestinal anatomy.
  • Inclusion of control groups (non-surgical patients) to isolate surgery-specific effects. For example, post-sleeve gastrectomy (SG) cases showed a 2.5-fold increase in this compound exposure, necessitating dose adjustments .

Q. What computational strategies are effective in predicting this compound’s spectral properties, and how do these compare to experimental data?

  • Answer : Density functional theory (DFT) simulations can predict UV-Vis and IR spectra by modeling molecular orbitals and vibrational modes. Validation involves:
  • Calculating % error between predicted and experimental absorption frequencies (e.g., −24.26% to +18.89% error observed for this compound’s IR spectra).
  • Regression analysis (e.g., R² = 0.970 for UV-Vis correlations) to assess model reliability. Discrepancies may arise from solvent effects or approximations in theoretical frameworks .

Q. How can adaptive Bayesian optimization (AdBO) improve this compound crystallization process development?

  • Answer : AdBO reduces experimental iterations by predicting optimal conditions (e.g., supersaturation, temperature) for nucleation and crystal growth. Key steps include:
  • Defining parameter search spaces based on prior kinetic data (e.g., induction times for slow kinetics in this compound).
  • Iteratively updating Bayesian models with in-situ PAT (process analytical technology) data. A case study achieved a 5-fold reduction in material usage compared to traditional DoE approaches, enhancing sustainability .

Q. How should researchers address contradictions between computational predictions and experimental results in this compound studies?

  • Answer : Discrepancies (e.g., in UV-Vis spectral predictions) require systematic error analysis:
  • Identify sources of variance (e.g., implicit solvation models in DFT vs. experimental solvent interactions).
  • Refine computational parameters (e.g., basis sets, exchange-correlation functionals) to better approximate experimental conditions.
  • Validate with orthogonal methods (e.g., NMR crystallography for structural verification) .

Q. What experimental designs are optimal for studying this compound resistance mechanisms in in vitro models?

  • Answer : Use site-directed mutagenesis to introduce known resistance-associated mutations (e.g., M184V in HIV reverse transcriptase). Key steps:
  • Conduct time-kill assays to quantify viral replication efficiency under this compound pressure.
  • Pair with molecular dynamics simulations to map drug-binding affinity changes.
  • Cross-validate with clinical isolates to ensure translational relevance .

Q. Methodological Guidelines

  • Data Interpretation : For spectral or pharmacokinetic data, always report confidence intervals (e.g., 95% CI for R² values) and effect sizes to contextualize findings .
  • Ethical Compliance : When using human-derived samples (e.g., post-surgery PK studies), ensure institutional review board (IRB) approval and explicit informed consent protocols .

Retrosynthesis Analysis

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Top-N result to add to graph 6

Feasible Synthetic Routes

Reactant of Route 1
Lamivudine
Reactant of Route 2
Lamivudine

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Please be aware that all articles and product information presented on BenchChem are intended solely for informational purposes. The products available for purchase on BenchChem are specifically designed for in-vitro studies, which are conducted outside of living organisms. In-vitro studies, derived from the Latin term "in glass," involve experiments performed in controlled laboratory settings using cells or tissues. It is important to note that these products are not categorized as medicines or drugs, and they have not received approval from the FDA for the prevention, treatment, or cure of any medical condition, ailment, or disease. We must emphasize that any form of bodily introduction of these products into humans or animals is strictly prohibited by law. It is essential to adhere to these guidelines to ensure compliance with legal and ethical standards in research and experimentation.