
Nilotinib
Description
Key Targets and Selectivity
- Primary Target : Bcr-Abl (IC₅₀ = 20–30 nM).
- Secondary Targets : Platelet-derived growth factor receptor (PDGFR), c-KIT, and colony-stimulating factor 1 receptor (CSF-1R).
- Off-Target Effects : Discoidin domain receptor 1 (DDR1) and NQO2 oxidoreductase, though with lower affinity.
Compared to first-generation TKIs like imatinib, this compound exhibits superior specificity, avoiding broad-spectrum kinase inhibition seen in drugs like dasatinib. The table below highlights its selectivity profile:
Property | This compound | Imatinib | Dasatinib |
---|---|---|---|
Bcr-Abl Inhibition | 30-fold > Imatinib | Baseline | Similar to this compound |
Target Spectrum | Narrow | Moderate | Broad |
DDR1 Inhibition | Yes (IC₅₀ = 50 nM) | No | Yes |
TEC Family Kinase Inhibition | No | No | Yes |
Nomenclature and Common Identifiers
This compound is systematically identified by the following nomenclature and molecular descriptors:
IUPAC Name
4-Methyl-N-[3-(4-methyl-1H-imidazol-1-yl)-5-(trifluoromethyl)phenyl]-3-[[4-(3-pyridinyl)-2-pyrimidinyl]amino]benzamide.
Molecular Identifiers
Identifier | Value |
---|---|
CAS Registry Number | 641571-10-0 |
Empirical Formula | C₂₈H₂₂F₃N₇O |
Molecular Weight | 529.52 g/mol |
SMILES | CC1=CN(C2=CC(NC(C3=CC=C(C(NC4=NC=CC(C5=CC=CN=C5)=N4)=C3)C)=O)=CC(C(F)(F)F)=C2)C=N1 |
InChI Key | HHZIURLSWUIHRB-UHFFFAOYSA-N |
UNII | F41401512X |
Data sourced from .
Properties
IUPAC Name |
4-methyl-N-[3-(4-methylimidazol-1-yl)-5-(trifluoromethyl)phenyl]-3-[(4-pyridin-3-ylpyrimidin-2-yl)amino]benzamide | |
---|---|---|
Source | PubChem | |
URL | https://pubchem.ncbi.nlm.nih.gov | |
Description | Data deposited in or computed by PubChem | |
InChI |
InChI=1S/C28H22F3N7O/c1-17-5-6-19(10-25(17)37-27-33-9-7-24(36-27)20-4-3-8-32-14-20)26(39)35-22-11-21(28(29,30)31)12-23(13-22)38-15-18(2)34-16-38/h3-16H,1-2H3,(H,35,39)(H,33,36,37) | |
Source | PubChem | |
URL | https://pubchem.ncbi.nlm.nih.gov | |
Description | Data deposited in or computed by PubChem | |
InChI Key |
HHZIURLSWUIHRB-UHFFFAOYSA-N | |
Source | PubChem | |
URL | https://pubchem.ncbi.nlm.nih.gov | |
Description | Data deposited in or computed by PubChem | |
Canonical SMILES |
CC1=C(C=C(C=C1)C(=O)NC2=CC(=CC(=C2)C(F)(F)F)N3C=C(N=C3)C)NC4=NC=CC(=N4)C5=CN=CC=C5 | |
Source | PubChem | |
URL | https://pubchem.ncbi.nlm.nih.gov | |
Description | Data deposited in or computed by PubChem | |
Molecular Formula |
C28H22F3N7O | |
Source | PubChem | |
URL | https://pubchem.ncbi.nlm.nih.gov | |
Description | Data deposited in or computed by PubChem | |
DSSTOX Substance ID |
DTXSID5042663 | |
Record name | Nilotinib | |
Source | EPA DSSTox | |
URL | https://comptox.epa.gov/dashboard/DTXSID5042663 | |
Description | DSSTox provides a high quality public chemistry resource for supporting improved predictive toxicology. | |
Molecular Weight |
529.5 g/mol | |
Source | PubChem | |
URL | https://pubchem.ncbi.nlm.nih.gov | |
Description | Data deposited in or computed by PubChem | |
Physical Description |
Solid | |
Record name | Nilotinib | |
Source | Human Metabolome Database (HMDB) | |
URL | http://www.hmdb.ca/metabolites/HMDB0015595 | |
Description | The Human Metabolome Database (HMDB) is a freely available electronic database containing detailed information about small molecule metabolites found in the human body. | |
Explanation | HMDB is offered to the public as a freely available resource. Use and re-distribution of the data, in whole or in part, for commercial purposes requires explicit permission of the authors and explicit acknowledgment of the source material (HMDB) and the original publication (see the HMDB citing page). We ask that users who download significant portions of the database cite the HMDB paper in any resulting publications. | |
Solubility |
The solubility ... in aqueous solutions decreases with increasing pH, 2.01e-03 g/L | |
Record name | Nilotinib | |
Source | Hazardous Substances Data Bank (HSDB) | |
URL | https://pubchem.ncbi.nlm.nih.gov/source/hsdb/7842 | |
Description | The Hazardous Substances Data Bank (HSDB) is a toxicology database that focuses on the toxicology of potentially hazardous chemicals. It provides information on human exposure, industrial hygiene, emergency handling procedures, environmental fate, regulatory requirements, nanomaterials, and related areas. The information in HSDB has been assessed by a Scientific Review Panel. | |
Record name | Nilotinib | |
Source | Human Metabolome Database (HMDB) | |
URL | http://www.hmdb.ca/metabolites/HMDB0015595 | |
Description | The Human Metabolome Database (HMDB) is a freely available electronic database containing detailed information about small molecule metabolites found in the human body. | |
Explanation | HMDB is offered to the public as a freely available resource. Use and re-distribution of the data, in whole or in part, for commercial purposes requires explicit permission of the authors and explicit acknowledgment of the source material (HMDB) and the original publication (see the HMDB citing page). We ask that users who download significant portions of the database cite the HMDB paper in any resulting publications. | |
Color/Form |
White to slightly yellowish to slightly greenish yellow powder | |
CAS No. |
641571-10-0, 923288-90-8 | |
Record name | Nilotinib | |
Source | CAS Common Chemistry | |
URL | https://commonchemistry.cas.org/detail?cas_rn=641571-10-0 | |
Description | CAS Common Chemistry is an open community resource for accessing chemical information. Nearly 500,000 chemical substances from CAS REGISTRY cover areas of community interest, including common and frequently regulated chemicals, and those relevant to high school and undergraduate chemistry classes. This chemical information, curated by our expert scientists, is provided in alignment with our mission as a division of the American Chemical Society. | |
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Record name | Nilotinib [USAN:INN:BAN] | |
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Record name | Nilotinib | |
Source | DrugBank | |
URL | https://www.drugbank.ca/drugs/DB04868 | |
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Record name | Nilotinib | |
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Record name | Nilotinib | |
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Description | DSSTox provides a high quality public chemistry resource for supporting improved predictive toxicology. | |
Record name | 4-methyl-N-[3-(4-methyl-1H-imidazol-1-yl)-5-(trifluoromethyl)phenyl]-3-{[4-(pyridin-3-yl)pyrimidin-2-yl]amino}benzamide | |
Source | European Chemicals Agency (ECHA) | |
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Record name | 4-Methyl-N-(3-(4-methyl-1H-imidazol-1-yl)-5-(trifluoromethyl)-phenyl)-3-((4-(pyridin-3-yl)pyrimidin-2-yl)amino)benzamide | |
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Record name | NILOTINIB | |
Source | FDA Global Substance Registration System (GSRS) | |
URL | https://gsrs.ncats.nih.gov/ginas/app/beta/substances/F41401512X | |
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Record name | Nilotinib | |
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URL | https://pubchem.ncbi.nlm.nih.gov/source/hsdb/7842 | |
Description | The Hazardous Substances Data Bank (HSDB) is a toxicology database that focuses on the toxicology of potentially hazardous chemicals. It provides information on human exposure, industrial hygiene, emergency handling procedures, environmental fate, regulatory requirements, nanomaterials, and related areas. The information in HSDB has been assessed by a Scientific Review Panel. | |
Record name | Nilotinib | |
Source | Human Metabolome Database (HMDB) | |
URL | http://www.hmdb.ca/metabolites/HMDB0015595 | |
Description | The Human Metabolome Database (HMDB) is a freely available electronic database containing detailed information about small molecule metabolites found in the human body. | |
Explanation | HMDB is offered to the public as a freely available resource. Use and re-distribution of the data, in whole or in part, for commercial purposes requires explicit permission of the authors and explicit acknowledgment of the source material (HMDB) and the original publication (see the HMDB citing page). We ask that users who download significant portions of the database cite the HMDB paper in any resulting publications. | |
Preparation Methods
Original Novartis Process (WO 2004/005281)
The foundational synthesis described in WO 2004/005281 involved a 12-step sequence with cumulative yields below 5%. Key limitations included:
- Step 2 (Nitro Reduction): 35% yield over 65 hours using iron/HCl
- Final Coupling: 52.6% yield with carbonyl diimidazole in N-methylpyrrolidone (NMP)
- Purity Challenges: 0.03% residual 4-methyl-3-[[4-(3-pyridinyl)-2-pyrimidinyl]amino]benzoic acid impurity
The process required multiple solvent switches (toluene → ethanol → dichloromethane) and produced metastable hydrochloride salts prone to hydrate formation under 75% RH.
Modern Synthetic Methodologies
High-Yield Coupling Process (US20150183762A1)
This 2015 patent demonstrates a 3-step improvement over Novartis' method:
Parameter | Novartis Process | US20150183762A1 |
---|---|---|
Total Steps | 12 | 9 |
Cumulative Yield | <5% | 68% |
Reaction Time | 65-100 h | 9-20 h |
Purity (HPLC) | 99.84% | 99.92% |
Key innovations:
Stable Hydrochloride Salt Preparation (EP2626355A1)
This 2012 patent addresses crystalline instability via:
- Controlled Hydration: Dihydrate formation at 40°C/75% RH
- XRPD Stability: Peaks at 8.6148° 2θ (d=10.26Å) and 19.2618° 2θ (4.60Å) remain unchanged after 40h at 70°C
- Formulation Advantage: Direct compression compatibility with microcrystalline cellulose (Table 1)
Table 1: Hydrochloride Formulation Composition
Component | mg/Capsule |
---|---|
This compound HCl | 241.00 |
Microcrystalline Cellulose | 107.00 |
Calcium CMC | 30.00 |
Sodium Stearyl Fumarate | 7.00 |
Palladium-Catalyzed Innovations
Buchwald-Hartwig Amination (J. Am. Chem. Soc. 2012)
Ueda and Buchwald's method achieves 94% yield in 4.25 hours through:
- N1-Selective Arylation:
$$ \text{C}{13}\text{H}{11}\text{F}3\text{N}2 + \text{C}{14}\text{H}{12}\text{N}4 \xrightarrow[\text{110°C}]{\text{Pd}2\text{(dba)}3, \text{Xantphos}} \text{C}{28}\text{H}{22}\text{F}3\text{N}_7\text{O} $$ - Solvent System: NMP/water biphasic conditions enable catalyst recycling
Industrial-Scale Production
Continuous Flow Synthesis (Columbia University, 2023)
Projected 1,150 kg/year capacity using:
- Plug-Flow Reactors:
- Residence time: 17 minutes at 110°C
- Space-time yield: 38.6 kg/m³/h
- Economic Model:
Purification and Characterization
Crystallization Optimization (EP3404025A1)
- Methanol Wash: Reduces acid impurity from 0.15% to <0.03%
- DSC Profile: Endotherms at 107°C (dehydration) and 251°C (melt)
Stability Considerations
Hydrate Form Control
- Dihydrate Stability: Maintains XRPD pattern after 6 months at 25°C/60% RH
- Kinetic vs Thermodynamic Forms:
Comparative Method Analysis
Table 2: Synthesis Route Comparison
Method | Steps | Yield | Purity | Key Advantage |
---|---|---|---|---|
Novartis (2004) | 12 | <5% | 99.84% | First FDA-approved |
Buchwald (2012) | 4 | 94% | 99.46% | Step reduction |
US20150183762A1 | 9 | 68% | 99.92% | Process safety |
Flow System (2023) | 3 | 89% | 99.89% | Scalability |
Chemical Reactions Analysis
Nilotinib undergoes various chemical reactions, including oxidation, reduction, and substitution. Common reagents used in these reactions include oxidizing agents, reducing agents, and nucleophiles. For example, this compound can be synthesized via benzanilide formation in water using native chemical ligation (NCL) chemistry . This method involves the coupling of benzoyl and mercaptoaniline fragments to form aromatic amide bonds. The major products formed from these reactions include various derivatives of this compound with potential therapeutic applications.
Scientific Research Applications
Treatment of Chronic Myeloid Leukemia
Clinical Efficacy
Nilotinib has been extensively studied for its efficacy in treating newly diagnosed chronic-phase CML. The ENESTnd study demonstrated that patients receiving this compound achieved significantly higher rates of major molecular response compared to those treated with imatinib. Specifically, at 12 months, the rates were 44% and 43% for this compound doses of 300 mg and 400 mg twice daily, respectively, versus 22% for imatinib (p < 0.001) .
Long-Term Outcomes
In a phase 2 study involving 122 patients treated with this compound (400 mg twice daily), long-term follow-up indicated that 91% achieved a complete cytogenetic response, with significant event-free survival rates at 89% and overall survival rates at 93% after five years .
Table 1: Summary of Clinical Trials for this compound in CML
Study | Patient Population | This compound Dose | Major Molecular Response Rate | Event-Free Survival (5 years) | Overall Survival (5 years) |
---|---|---|---|---|---|
ENESTnd | Newly diagnosed CML | 300 mg & 400 mg BID | 44% (300 mg), 43% (400 mg) | Not specified | Not specified |
Phase 2 | Newly diagnosed CML | 400 mg BID | 91% | 89% | 93% |
Potential Applications in Neurodegenerative Diseases
Parkinson's Disease
this compound is being investigated for its potential to alleviate symptoms of Parkinson's disease. A phase II trial indicated that while this compound was generally safe and tolerable, it did not demonstrate significant clinical benefits compared to placebo . The study involved multiple sites and assessed safety across different dosages, revealing more adverse events than the placebo group.
Alzheimer's Disease
Research has also explored this compound's neuroprotective properties in Alzheimer's disease. Preclinical studies suggest that this compound can reduce levels of amyloid-β and prevent neuronal degeneration by inhibiting c-Abl signaling pathways . However, clinical trials have yet to yield robust evidence supporting its efficacy in humans.
Table 2: Summary of this compound Studies in Neurodegenerative Diseases
Study | Condition | Findings | |
---|---|---|---|
NILO-PD | Parkinson's Disease | Safe but no significant clinical benefit | Not recommended for use |
Preclinical | Alzheimer's Disease | Reduces amyloid-β levels; prevents neuron loss | Promising but unproven in humans |
Safety Profile and Adverse Effects
While this compound is effective against CML, its safety profile warrants attention. Common adverse effects include cardiovascular events, rash, elevated bilirubin, and aminotransferases . In studies involving CML patients, treatment discontinuation due to toxicity occurred in approximately 19% of cases.
Table 3: Adverse Effects Reported in Clinical Trials
Adverse Effect | Percentage of Patients Affected |
---|---|
Rash | 55% |
Elevated Bilirubin | 57% |
Elevated Aminotransferases | 48% |
Cardiovascular Events | 10% |
Mechanism of Action
Nilotinib exerts its effects by selectively inhibiting the BCR-ABL tyrosine kinase, c-KIT, and platelet-derived growth factor receptor (PDGFR) . It binds to the ATP-binding site of BCR-ABL and inhibits its tyrosine kinase activity, thereby preventing the phosphorylation and activation of downstream signaling pathways involved in cell proliferation and survival. This compound is particularly effective in cases of chronic myeloid leukemia that are resistant to imatinib, another tyrosine kinase inhibitor .
Comparison with Similar Compounds
Structural Comparison with Similar Compounds
Nilotinib’s structure optimizes imatinib’s scaffold (Figure 1). Key modifications include:
- Pyridine substituent : Replaces imatinib’s phenyl ring, enhancing binding affinity .
- Trifluoromethyl group : Improves pharmacokinetic properties .
Compound | Core Structure | Key Substituents | Kinase Targets |
---|---|---|---|
This compound | Phenylamino-pyrimidine | 3-pyridine, trifluoromethyl | BCR-ABL1, KIT, PDGFRα, DDR |
Imatinib | Phenylamino-pyrimidine | Benzamide, methylpiperazine | BCR-ABL1, KIT, PDGFRα |
Radotinib | Phenylamino-pyrimidine | 2-pyrazine, trifluoromethyl | BCR-ABL1 |
Dasatinib | Thiazole | None | BCR-ABL1, SRC family kinases |
Radotinib and this compound share the trifluoromethyl group but differ in heterocyclic substituents (pyridine vs. pyrazine) . Dasatinib, structurally distinct, inhibits SRC kinases .
Efficacy in CML: Comparative Clinical Data
Response Rates in Newly Diagnosed CML
- This compound vs. Imatinib : In the ENESTnd trial, this compound 300 mg twice daily achieved higher 5-year major molecular response (MMR) rates (77% vs. 60% for imatinib) and lower progression to accelerated/blast phase .
- This compound vs. Dasatinib: Pooled analyses show comparable 1-year complete cytogenetic response (CCyR) rates (~77%) . No phase III head-to-head trials exist, but cross-trial data suggest similar efficacy .
Trial | 1-Year CCyR (%) | 5-Year MMR (%) | TFR Eligibility |
---|---|---|---|
This compound 300 mg | 77.7 | 77 | 48% (MR4.5) |
Dasatinib 100 mg | 77.1 | 76 | 30% (MR4.5) |
Imatinib 400 mg | 65.2 | 60 | <10% |
TFR = Treatment-free remission; MR4.5 = Molecular response 4.5-log reduction
Resistance Profiles
This compound overrides most imatinib-resistant mutations (e.g., Y253H, E255K) but is ineffective against T315I .
Cost-Effectiveness
This compound is more cost-effective than dasatinib in long-term CML management:
Biological Activity
Nilotinib is a potent, second-generation tyrosine kinase inhibitor (TKI) primarily used in the treatment of chronic myeloid leukemia (CML). It selectively inhibits the BCR-ABL1 fusion protein, which is responsible for the uncontrolled proliferation of myeloid cells in CML. This article explores the biological activity of this compound, focusing on its mechanisms of action, effects on various cell types, clinical efficacy, and associated adverse effects.
This compound works by binding to the ATP-binding site of the BCR-ABL1 protein, inhibiting its kinase activity. This inhibition prevents the phosphorylation of downstream signaling molecules involved in cell proliferation and survival pathways. The specificity of this compound for the BCR-ABL1 kinase also contributes to its effectiveness and reduced off-target effects compared to earlier TKIs like imatinib.
Effects on Endothelial Cells
Recent studies have highlighted this compound's impact on endothelial cell function, which is critical for vascular health. Research utilizing human induced pluripotent stem cells (hiPSCs) has shown that this compound adversely affects endothelial cell proliferation and migration while increasing intracellular nitric oxide levels. Notably, these effects were independent of ABL1 inhibition, suggesting that this compound may exert off-target effects that compromise endothelial function and contribute to this compound-induced arterial disease (NAD) in some patients .
Endothelial Cell Function | Effect of this compound |
---|---|
Proliferation | Decreased |
Migration | Decreased |
Intracellular Nitric Oxide | Increased |
Barrier Function | No effect |
Lipid Uptake | No effect |
Clinical Efficacy
This compound has demonstrated significant efficacy in treating CML. In the ENEST1st trial, which included 1089 patients with newly diagnosed CML in chronic phase, this compound achieved a major molecular response (MMR) rate of 38.4% at 18 months . Long-term follow-up studies have confirmed sustained efficacy, with 91% of patients achieving a complete cytogenetic response and a significant proportion reaching deep molecular responses (MR4 and MR4.5) .
Case Study: Long-Term Efficacy
A phase 2 study involving 122 patients treated with this compound at 400 mg twice daily reported:
- Event-Free Survival : 89% at 5 years
- Overall Survival : 93% at 5 years
- Sustained MR4.5 : Achieved by 59% of patients beyond 2 years
- Adverse Events : Cardiovascular events occurred in 10% of patients .
Adverse Effects
Despite its efficacy, this compound is associated with several adverse effects, particularly cardiovascular complications. In clinical trials, ischemic cardiovascular events were reported in approximately 6-10% of patients . Other common side effects include:
- Rash: 55%
- Elevated bilirubin: 57%
- Elevated aminotransferases: 48%
These adverse effects necessitate careful monitoring during treatment.
Q & A
Q. How to interpret this compound’s dual role in promoting autophagy and valvular calcification?
Retrosynthesis Analysis
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Top-N result to add to graph | 6 |
Feasible Synthetic Routes
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Please be aware that all articles and product information presented on BenchChem are intended solely for informational purposes. The products available for purchase on BenchChem are specifically designed for in-vitro studies, which are conducted outside of living organisms. In-vitro studies, derived from the Latin term "in glass," involve experiments performed in controlled laboratory settings using cells or tissues. It is important to note that these products are not categorized as medicines or drugs, and they have not received approval from the FDA for the prevention, treatment, or cure of any medical condition, ailment, or disease. We must emphasize that any form of bodily introduction of these products into humans or animals is strictly prohibited by law. It is essential to adhere to these guidelines to ensure compliance with legal and ethical standards in research and experimentation.