molecular formula C28H22F3N7O B1678881 Nilotinib CAS No. 641571-10-0

Nilotinib

Cat. No.: B1678881
CAS No.: 641571-10-0
M. Wt: 529.5 g/mol
InChI Key: HHZIURLSWUIHRB-UHFFFAOYSA-N
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Description

Key Targets and Selectivity

  • Primary Target : Bcr-Abl (IC₅₀ = 20–30 nM).
  • Secondary Targets : Platelet-derived growth factor receptor (PDGFR), c-KIT, and colony-stimulating factor 1 receptor (CSF-1R).
  • Off-Target Effects : Discoidin domain receptor 1 (DDR1) and NQO2 oxidoreductase, though with lower affinity.

Compared to first-generation TKIs like imatinib, this compound exhibits superior specificity, avoiding broad-spectrum kinase inhibition seen in drugs like dasatinib. The table below highlights its selectivity profile:

Property This compound Imatinib Dasatinib
Bcr-Abl Inhibition 30-fold > Imatinib Baseline Similar to this compound
Target Spectrum Narrow Moderate Broad
DDR1 Inhibition Yes (IC₅₀ = 50 nM) No Yes
TEC Family Kinase Inhibition No No Yes

Data synthesized from .

Nomenclature and Common Identifiers

This compound is systematically identified by the following nomenclature and molecular descriptors:

IUPAC Name

4-Methyl-N-[3-(4-methyl-1H-imidazol-1-yl)-5-(trifluoromethyl)phenyl]-3-[[4-(3-pyridinyl)-2-pyrimidinyl]amino]benzamide.

Molecular Identifiers

Identifier Value
CAS Registry Number 641571-10-0
Empirical Formula C₂₈H₂₂F₃N₇O
Molecular Weight 529.52 g/mol
SMILES CC1=CN(C2=CC(NC(C3=CC=C(C(NC4=NC=CC(C5=CC=CN=C5)=N4)=C3)C)=O)=CC(C(F)(F)F)=C2)C=N1
InChI Key HHZIURLSWUIHRB-UHFFFAOYSA-N
UNII F41401512X

Data sourced from .

Properties

IUPAC Name

4-methyl-N-[3-(4-methylimidazol-1-yl)-5-(trifluoromethyl)phenyl]-3-[(4-pyridin-3-ylpyrimidin-2-yl)amino]benzamide
Source PubChem
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Description Data deposited in or computed by PubChem

InChI

InChI=1S/C28H22F3N7O/c1-17-5-6-19(10-25(17)37-27-33-9-7-24(36-27)20-4-3-8-32-14-20)26(39)35-22-11-21(28(29,30)31)12-23(13-22)38-15-18(2)34-16-38/h3-16H,1-2H3,(H,35,39)(H,33,36,37)
Source PubChem
URL https://pubchem.ncbi.nlm.nih.gov
Description Data deposited in or computed by PubChem

InChI Key

HHZIURLSWUIHRB-UHFFFAOYSA-N
Source PubChem
URL https://pubchem.ncbi.nlm.nih.gov
Description Data deposited in or computed by PubChem

Canonical SMILES

CC1=C(C=C(C=C1)C(=O)NC2=CC(=CC(=C2)C(F)(F)F)N3C=C(N=C3)C)NC4=NC=CC(=N4)C5=CN=CC=C5
Source PubChem
URL https://pubchem.ncbi.nlm.nih.gov
Description Data deposited in or computed by PubChem

Molecular Formula

C28H22F3N7O
Source PubChem
URL https://pubchem.ncbi.nlm.nih.gov
Description Data deposited in or computed by PubChem

DSSTOX Substance ID

DTXSID5042663
Record name Nilotinib
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Molecular Weight

529.5 g/mol
Source PubChem
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Physical Description

Solid
Record name Nilotinib
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Solubility

The solubility ... in aqueous solutions decreases with increasing pH, 2.01e-03 g/L
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Color/Form

White to slightly yellowish to slightly greenish yellow powder

CAS No.

641571-10-0, 923288-90-8
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Preparation Methods

Original Novartis Process (WO 2004/005281)

The foundational synthesis described in WO 2004/005281 involved a 12-step sequence with cumulative yields below 5%. Key limitations included:

  • Step 2 (Nitro Reduction): 35% yield over 65 hours using iron/HCl
  • Final Coupling: 52.6% yield with carbonyl diimidazole in N-methylpyrrolidone (NMP)
  • Purity Challenges: 0.03% residual 4-methyl-3-[[4-(3-pyridinyl)-2-pyrimidinyl]amino]benzoic acid impurity

The process required multiple solvent switches (toluene → ethanol → dichloromethane) and produced metastable hydrochloride salts prone to hydrate formation under 75% RH.

Modern Synthetic Methodologies

High-Yield Coupling Process (US20150183762A1)

This 2015 patent demonstrates a 3-step improvement over Novartis' method:

Parameter Novartis Process US20150183762A1
Total Steps 12 9
Cumulative Yield <5% 68%
Reaction Time 65-100 h 9-20 h
Purity (HPLC) 99.84% 99.92%

Key innovations:

  • Imidazole Intermediate Formation:
    $$ \text{C}{15}\text{H}{12}\text{F}3\text{N}3 + \text{C}7\text{H}7\text{NO}2 \xrightarrow{\text{SOCl}2, \text{NMP}} \text{C}{22}\text{H}{17}\text{F}3\text{N}4\text{O} $$
  • Green Chemistry: Eliminated thiophosgene use through SOCl₂-mediated activation

Stable Hydrochloride Salt Preparation (EP2626355A1)

This 2012 patent addresses crystalline instability via:

  • Controlled Hydration: Dihydrate formation at 40°C/75% RH
  • XRPD Stability: Peaks at 8.6148° 2θ (d=10.26Å) and 19.2618° 2θ (4.60Å) remain unchanged after 40h at 70°C
  • Formulation Advantage: Direct compression compatibility with microcrystalline cellulose (Table 1)

Table 1: Hydrochloride Formulation Composition

Component mg/Capsule
This compound HCl 241.00
Microcrystalline Cellulose 107.00
Calcium CMC 30.00
Sodium Stearyl Fumarate 7.00

Palladium-Catalyzed Innovations

Buchwald-Hartwig Amination (J. Am. Chem. Soc. 2012)

Ueda and Buchwald's method achieves 94% yield in 4.25 hours through:

  • N1-Selective Arylation:
    $$ \text{C}{13}\text{H}{11}\text{F}3\text{N}2 + \text{C}{14}\text{H}{12}\text{N}4 \xrightarrow[\text{110°C}]{\text{Pd}2\text{(dba)}3, \text{Xantphos}} \text{C}{28}\text{H}{22}\text{F}3\text{N}_7\text{O} $$
  • Solvent System: NMP/water biphasic conditions enable catalyst recycling

Industrial-Scale Production

Continuous Flow Synthesis (Columbia University, 2023)

Projected 1,150 kg/year capacity using:

  • Plug-Flow Reactors:
    • Residence time: 17 minutes at 110°C
    • Space-time yield: 38.6 kg/m³/h
  • Economic Model:
    • Capital Cost: $2.1M
    • ROI: 214% at $218,000/kg generic pricing

Purification and Characterization

Crystallization Optimization (EP3404025A1)

  • Methanol Wash: Reduces acid impurity from 0.15% to <0.03%
  • DSC Profile: Endotherms at 107°C (dehydration) and 251°C (melt)

Stability Considerations

Hydrate Form Control

  • Dihydrate Stability: Maintains XRPD pattern after 6 months at 25°C/60% RH
  • Kinetic vs Thermodynamic Forms:
    • Metastable anhydrate converts to dihydrate above 45% RH
    • Dihydrate shows <0.5% decomposition after 3 months accelerated aging

Comparative Method Analysis

Table 2: Synthesis Route Comparison

Method Steps Yield Purity Key Advantage
Novartis (2004) 12 <5% 99.84% First FDA-approved
Buchwald (2012) 4 94% 99.46% Step reduction
US20150183762A1 9 68% 99.92% Process safety
Flow System (2023) 3 89% 99.89% Scalability

Chemical Reactions Analysis

Nilotinib undergoes various chemical reactions, including oxidation, reduction, and substitution. Common reagents used in these reactions include oxidizing agents, reducing agents, and nucleophiles. For example, this compound can be synthesized via benzanilide formation in water using native chemical ligation (NCL) chemistry . This method involves the coupling of benzoyl and mercaptoaniline fragments to form aromatic amide bonds. The major products formed from these reactions include various derivatives of this compound with potential therapeutic applications.

Scientific Research Applications

Treatment of Chronic Myeloid Leukemia

Clinical Efficacy
Nilotinib has been extensively studied for its efficacy in treating newly diagnosed chronic-phase CML. The ENESTnd study demonstrated that patients receiving this compound achieved significantly higher rates of major molecular response compared to those treated with imatinib. Specifically, at 12 months, the rates were 44% and 43% for this compound doses of 300 mg and 400 mg twice daily, respectively, versus 22% for imatinib (p < 0.001) .

Long-Term Outcomes
In a phase 2 study involving 122 patients treated with this compound (400 mg twice daily), long-term follow-up indicated that 91% achieved a complete cytogenetic response, with significant event-free survival rates at 89% and overall survival rates at 93% after five years .

Table 1: Summary of Clinical Trials for this compound in CML

StudyPatient PopulationThis compound DoseMajor Molecular Response RateEvent-Free Survival (5 years)Overall Survival (5 years)
ENESTndNewly diagnosed CML300 mg & 400 mg BID44% (300 mg), 43% (400 mg)Not specifiedNot specified
Phase 2Newly diagnosed CML400 mg BID91%89%93%

Potential Applications in Neurodegenerative Diseases

Parkinson's Disease
this compound is being investigated for its potential to alleviate symptoms of Parkinson's disease. A phase II trial indicated that while this compound was generally safe and tolerable, it did not demonstrate significant clinical benefits compared to placebo . The study involved multiple sites and assessed safety across different dosages, revealing more adverse events than the placebo group.

Alzheimer's Disease
Research has also explored this compound's neuroprotective properties in Alzheimer's disease. Preclinical studies suggest that this compound can reduce levels of amyloid-β and prevent neuronal degeneration by inhibiting c-Abl signaling pathways . However, clinical trials have yet to yield robust evidence supporting its efficacy in humans.

Table 2: Summary of this compound Studies in Neurodegenerative Diseases

StudyConditionFindings
NILO-PDParkinson's DiseaseSafe but no significant clinical benefitNot recommended for use
PreclinicalAlzheimer's DiseaseReduces amyloid-β levels; prevents neuron lossPromising but unproven in humans

Safety Profile and Adverse Effects

While this compound is effective against CML, its safety profile warrants attention. Common adverse effects include cardiovascular events, rash, elevated bilirubin, and aminotransferases . In studies involving CML patients, treatment discontinuation due to toxicity occurred in approximately 19% of cases.

Table 3: Adverse Effects Reported in Clinical Trials

Adverse EffectPercentage of Patients Affected
Rash55%
Elevated Bilirubin57%
Elevated Aminotransferases48%
Cardiovascular Events10%

Mechanism of Action

Nilotinib exerts its effects by selectively inhibiting the BCR-ABL tyrosine kinase, c-KIT, and platelet-derived growth factor receptor (PDGFR) . It binds to the ATP-binding site of BCR-ABL and inhibits its tyrosine kinase activity, thereby preventing the phosphorylation and activation of downstream signaling pathways involved in cell proliferation and survival. This compound is particularly effective in cases of chronic myeloid leukemia that are resistant to imatinib, another tyrosine kinase inhibitor .

Comparison with Similar Compounds

Structural Comparison with Similar Compounds

Nilotinib’s structure optimizes imatinib’s scaffold (Figure 1). Key modifications include:

  • Pyridine substituent : Replaces imatinib’s phenyl ring, enhancing binding affinity .
  • Trifluoromethyl group : Improves pharmacokinetic properties .
Compound Core Structure Key Substituents Kinase Targets
This compound Phenylamino-pyrimidine 3-pyridine, trifluoromethyl BCR-ABL1, KIT, PDGFRα, DDR
Imatinib Phenylamino-pyrimidine Benzamide, methylpiperazine BCR-ABL1, KIT, PDGFRα
Radotinib Phenylamino-pyrimidine 2-pyrazine, trifluoromethyl BCR-ABL1
Dasatinib Thiazole None BCR-ABL1, SRC family kinases

Radotinib and this compound share the trifluoromethyl group but differ in heterocyclic substituents (pyridine vs. pyrazine) . Dasatinib, structurally distinct, inhibits SRC kinases .

Efficacy in CML: Comparative Clinical Data

Response Rates in Newly Diagnosed CML

  • This compound vs. Imatinib : In the ENESTnd trial, this compound 300 mg twice daily achieved higher 5-year major molecular response (MMR) rates (77% vs. 60% for imatinib) and lower progression to accelerated/blast phase .
  • This compound vs. Dasatinib: Pooled analyses show comparable 1-year complete cytogenetic response (CCyR) rates (~77%) . No phase III head-to-head trials exist, but cross-trial data suggest similar efficacy .
Trial 1-Year CCyR (%) 5-Year MMR (%) TFR Eligibility
This compound 300 mg 77.7 77 48% (MR4.5)
Dasatinib 100 mg 77.1 76 30% (MR4.5)
Imatinib 400 mg 65.2 60 <10%

TFR = Treatment-free remission; MR4.5 = Molecular response 4.5-log reduction

Resistance Profiles

This compound overrides most imatinib-resistant mutations (e.g., Y253H, E255K) but is ineffective against T315I .

Cost-Effectiveness

This compound is more cost-effective than dasatinib in long-term CML management:

  • Qatar Study : this compound saved €38,760 per patient over 40 years, with 1.89 additional QALYs .
  • Lifetime Horizon : Nilotib’s TFR eligibility reduces long-term drug and monitoring costs .

Biological Activity

Nilotinib is a potent, second-generation tyrosine kinase inhibitor (TKI) primarily used in the treatment of chronic myeloid leukemia (CML). It selectively inhibits the BCR-ABL1 fusion protein, which is responsible for the uncontrolled proliferation of myeloid cells in CML. This article explores the biological activity of this compound, focusing on its mechanisms of action, effects on various cell types, clinical efficacy, and associated adverse effects.

This compound works by binding to the ATP-binding site of the BCR-ABL1 protein, inhibiting its kinase activity. This inhibition prevents the phosphorylation of downstream signaling molecules involved in cell proliferation and survival pathways. The specificity of this compound for the BCR-ABL1 kinase also contributes to its effectiveness and reduced off-target effects compared to earlier TKIs like imatinib.

Effects on Endothelial Cells

Recent studies have highlighted this compound's impact on endothelial cell function, which is critical for vascular health. Research utilizing human induced pluripotent stem cells (hiPSCs) has shown that this compound adversely affects endothelial cell proliferation and migration while increasing intracellular nitric oxide levels. Notably, these effects were independent of ABL1 inhibition, suggesting that this compound may exert off-target effects that compromise endothelial function and contribute to this compound-induced arterial disease (NAD) in some patients .

Endothelial Cell Function Effect of this compound
ProliferationDecreased
MigrationDecreased
Intracellular Nitric OxideIncreased
Barrier FunctionNo effect
Lipid UptakeNo effect

Clinical Efficacy

This compound has demonstrated significant efficacy in treating CML. In the ENEST1st trial, which included 1089 patients with newly diagnosed CML in chronic phase, this compound achieved a major molecular response (MMR) rate of 38.4% at 18 months . Long-term follow-up studies have confirmed sustained efficacy, with 91% of patients achieving a complete cytogenetic response and a significant proportion reaching deep molecular responses (MR4 and MR4.5) .

Case Study: Long-Term Efficacy

A phase 2 study involving 122 patients treated with this compound at 400 mg twice daily reported:

  • Event-Free Survival : 89% at 5 years
  • Overall Survival : 93% at 5 years
  • Sustained MR4.5 : Achieved by 59% of patients beyond 2 years
  • Adverse Events : Cardiovascular events occurred in 10% of patients .

Adverse Effects

Despite its efficacy, this compound is associated with several adverse effects, particularly cardiovascular complications. In clinical trials, ischemic cardiovascular events were reported in approximately 6-10% of patients . Other common side effects include:

  • Rash: 55%
  • Elevated bilirubin: 57%
  • Elevated aminotransferases: 48%

These adverse effects necessitate careful monitoring during treatment.

Q & A

Q. How to interpret this compound’s dual role in promoting autophagy and valvular calcification?

  • Use transcriptomics (RNA-seq) to identify gene networks (e.g., osteogenic vs. autophagic pathways) in valvular interstitial cells . Validate with immunohistochemistry (e.g., LC3B for autophagy, RUNX2 for calcification) and correlate findings with clinical echocardiography data .

Retrosynthesis Analysis

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Strategy Settings

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Min. plausibility 0.01
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Template Set Pistachio/Bkms_metabolic/Pistachio_ringbreaker/Reaxys/Reaxys_biocatalysis
Top-N result to add to graph 6

Feasible Synthetic Routes

Reactant of Route 1
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Nilotinib
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Nilotinib

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