molecular formula C13H10N2O4 B1683933 Thalidomide CAS No. 50-35-1

Thalidomide

Cat. No.: B1683933
CAS No.: 50-35-1
M. Wt: 258.23 g/mol
InChI Key: UEJJHQNACJXSKW-UHFFFAOYSA-N
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Description

Thalidomide (C₁₃H₁₀N₂O₄), initially marketed as a sedative in the 1950s, was withdrawn due to severe teratogenic effects, including limb malformations and organ defects . This compound’s mechanism involves binding cereblon (CRBN), a substrate receptor of the CRL4 E3 ubiquitin ligase complex, leading to proteasomal degradation of neosubstrates like SALL4 and GSPT1. This degradation underpins both its therapeutic effects (e.g., anti-inflammatory, anti-angiogenic properties) and teratogenicity .

Mechanism of Action

Target of Action

Thalidomide primarily targets a protein called Cereblon (CRBN) . CRBN is a substrate receptor of the Cullin-RING E3 Ubiquitin ligase complex . It plays a crucial role in various biological processes, including limb outgrowth, teratogenicity, and tumorigenesis .

Mode of Action

This compound binds to CRBN, inhibiting the ligase’s normal activity by preventing endogenous substrates from binding, thereby protecting them from degradation . It also recruits transcription factors such asIKZF1 and IKZF3 to the enzyme’s active site, promoting their degradation . This interaction leads to the modulation of various downstream processes, including the degradation of an unexpectedly wide range of transcription factors, such as SALL4 .

Biochemical Pathways

This compound affects several biochemical pathways. It has been found to promote the degradation of transcription factors, leading to the complete removal of SALL4 from cells . This action impacts the pathways involved in limb development . Additionally, this compound is effective in T helper cell (Th) immunoregulation by preferentially inducing Th2 cytokine production and inhibiting Th1 cytokine production in peripheral mononuclear cells .

Pharmacokinetics

This compound exhibits absorption rate-limited pharmacokinetics or the “flip-flop” phenomenon . Following a single dose of 200 mg in healthy male subjects, the peak concentration (Cmax) and the area under the curve (AUC∞) were calculated to be 2.00 ± 0.55 mg/L and 19.80 ± 3.61 mg*h/mL respectively . This compound is minimally metabolised by the liver, but is spontaneously hydrolysed into numerous renally excreted products .

Result of Action

The molecular and cellular effects of this compound’s action are diverse. It displays immunosuppressive and anti-angiogenic activity through modulating the release of inflammatory mediators like tumor necrosis factor-alpha (TNF-a) and other cytokine action . This compound is also known for its severe teratogenic effects, causing skeletal deformities such as amelia (absence of legs and/or arms), absence of bones, and phocomelia (malformation of the limbs) .

Action Environment

The action, efficacy, and stability of this compound can be influenced by various environmental factors. For instance, metabolic breakdown by CYP450 in the liver is required for this compound to be active . Furthermore, in rural areas of the world that lack extensive medical surveillance initiatives, this compound treatment of pregnant women with leprosy has continued to cause malformations .

Biochemical Analysis

Biochemical Properties

Thalidomide exists in two mirror-image forms: a racemic mixture of ®- and (S)-enantiomers. The ®-enantiomer has sedative effects, whereas the (S)-isomer is teratogenic . Under biological conditions, these isomers interconvert, rendering the separation of the isomers before use ineffective . This compound interacts with a protein called cereblon (CRBN), a component of an E3 ubiquitin ligase complex . The binding of this compound to CRBN affects the ubiquitin ligase activity of the complex .

Cellular Effects

This compound has been shown to have various effects on cells. It can inhibit the production of TNF-α and replication of HIV . It also has anti-angiogenic activity, suggesting that this compound can inhibit the growth of new blood vessels . This compound’s binding to CRBN can lead to the degradation of certain proteins, affecting cell survival and proliferation .

Molecular Mechanism

This compound initiates its effects by binding to CRBN, inhibiting its ubiquitin ligase activity . This binding alters the substrate specificity of the E3 ubiquitin ligase complex, leading to the degradation of specific proteins . For example, this compound and its derivatives can induce the degradation of transcription factors like Ikaros and Aiolos, which are crucial for the development of lymphoid cells and the survival of multiple myeloma cells .

Temporal Effects in Laboratory Settings

In laboratory settings, this compound has shown temporal effects. For instance, in patients with transfusion-dependent β-thalassemia, hemoglobin concentrations achieved a median elevation after 12 weeks of this compound treatment . This suggests that this compound’s effects can change over time in a laboratory setting.

Metabolic Pathways

This compound undergoes biotransformation by non-enzymatic hydrolysis and enzyme-mediated hydroxylation to form a multitude of metabolites

Transport and Distribution

This compound is administered orally and has a bioavailability of 90% . It has a protein binding of 55% and 66% for the ®- and (S)-enantiomers, respectively

Subcellular Localization

It has been suggested that the subcellular distribution of CRBN, the primary target of this compound, is critical for the efficacy of this compound-based medications .

Biological Activity

Thalidomide, originally marketed in the late 1950s as a sedative and treatment for morning sickness, is now recognized for its complex biological activity, which includes immunomodulation, anti-inflammatory effects, and anti-angiogenesis. Despite its notorious history of causing birth defects, recent research has revealed its potential therapeutic applications in various conditions, including multiple myeloma and leprosy. This article examines the biological activity of this compound, supported by case studies and detailed research findings.

This compound's biological effects are mediated through several mechanisms:

  • Cytokine Modulation : this compound selectively inhibits the production of tumor necrosis factor-alpha (TNF-α) in human monocytes by promoting the degradation of TNF-α mRNA. This action is crucial in managing inflammatory conditions .
  • Inhibition of NF-κB : this compound inhibits nuclear factor kappa B (NF-κB) activity by affecting I-κB kinase activity. NF-κB is pivotal in regulating immune responses and inflammatory cytokines such as IL-6 and IL-12 .
  • T Cell Activation : The compound stimulates T cell proliferation, particularly enhancing CD8+ T cell responses while promoting a Th2 cytokine profile that favors IL-4 production over interferon-gamma (IFN-γ) .
  • Anti-Angiogenic Properties : this compound has been shown to inhibit angiogenesis through its effects on vascular endothelial growth factor (VEGF) and basic fibroblast growth factor (bFGF), which may explain some of its teratogenic effects during fetal development .

Therapeutic Applications

This compound's unique properties have led to its reintroduction in clinical settings:

  • Multiple Myeloma : this compound is utilized in treating relapsed-refractory multiple myeloma due to its ability to inhibit tumor growth and modulate the immune response .
  • Erythema Nodosum Leprosum : It is effective in managing complications associated with leprosy, reducing inflammation and promoting healing .
  • COVID-19 Treatment : Recent studies indicate that this compound may accelerate recovery from severe COVID-19 by reducing inflammation and modulating immune responses, particularly when combined with low-dose glucocorticoids .

Case Study 1: this compound Embryopathy

A study documented a woman who experienced this compound embryopathy after taking the drug during pregnancy. The findings highlighted the teratogenic effects linked to this compound's mechanism of action involving the degradation of transcription factors essential for limb development, such as SALL4 .

Case Study 2: COVID-19 Treatment Efficacy

In a clinical trial involving COVID-19 patients, this compound treatment resulted in a significant reduction in hospital stay duration and mechanical ventilation requirements compared to standard care. This was attributed to its anti-inflammatory effects .

Data Tables

Mechanism of ActionEffect on CytokinesTherapeutic Use
Inhibition of TNF-αReduces inflammationMultiple Myeloma
Inhibition of NF-κBDecreases IL-6 and IL-12Erythema Nodosum Leprosum
T Cell ActivationEnhances CD8+ T cell responseCOVID-19 treatment
Anti-Angiogenic PropertiesInhibits VEGF and bFGFPotential cancer therapies

Scientific Research Applications

Clinical Applications

Thalidomide's therapeutic applications have expanded significantly since its initial ban. Below is a summary of its key uses:

Condition Indication Evidence & Studies
Erythema Nodosum LeprosumApproved by the FDA for treating leprosy-related complications.Demonstrated efficacy in reducing symptoms associated with leprosy .
Multiple MyelomaUsed as part of combination therapy for treatment.Clinical trials show improved survival rates and response in patients with relapsed or refractory multiple myeloma .
Graft Versus Host DiseaseInvestigated for treatment in chronic cases.Response rates between 20% to 79% reported; however, prophylactic use may increase GVHD incidence .
Angiogenesis InhibitionExplored for treatment of arteriovenous malformations (AVMs).A study involving 18 patients showed significant pain reduction and healing of ulcers after this compound treatment .
Inflammatory ConditionsEvaluated for conditions like sarcoidosis, cutaneous lupus, and rheumatoid arthritis.Positive outcomes reported in various studies highlighting anti-inflammatory properties .
HIV-Associated Wasting SyndromeUsed to manage weight loss associated with HIV.Demonstrated effectiveness in improving nutritional status .
Cancer CachexiaApplied in palliative care settings to alleviate symptoms.Noted for its analgesic and sedative properties .

Case Studies

  • Angiogenesis Inhibition in AVMs : A prospective observational study on 18 patients with symptomatic AVMs showed that this compound reduced pain and bleeding significantly. After 19 months of treatment, one patient exhibited complete resolution of the AVM .
  • Multiple Myeloma Treatment : A comprehensive analysis of this compound's role in treating multiple myeloma indicated improved patient outcomes when combined with other therapies like bortezomib (Velcade). This combination has been particularly beneficial for patients with advanced stages of the disease .
  • Graft Versus Host Disease : In a randomized trial assessing this compound's efficacy as a prophylactic agent against chronic graft versus host disease, results indicated that while it was effective therapeutically, it paradoxically increased the incidence of GVHD when used preventively .

Q & A

Basic Research Questions

Q. How should clinical trials evaluating thalidomide’s efficacy in hematological malignancies be designed to account for refractory populations?

  • Methodological Answer : Trials should incorporate dose-escalation protocols (e.g., starting at 200 mg/day, increasing by 200 mg every two weeks to 800 mg) and use paraprotein reduction (≥90% for complete response) as a primary endpoint, validated over at least six weeks . Survival metrics like event-free survival (Kaplan-Meier estimates) and stratification based on prior treatment history (e.g., post-high-dose chemotherapy relapse) are critical for ensuring clinical relevance. Bone marrow plasma cell counts and hemoglobin levels serve as secondary biomarkers .

Q. What in vitro models are suitable for studying this compound’s anti-angiogenic properties in vascular biology?

  • Methodological Answer : Human coronary artery endothelial cells (HCAECs) can be treated with this compound dissolved in DMSO at varying concentrations (0.1–1.0 mM) to assess dose-dependent inhibition of proliferation and migration. Nano-CT imaging provides high-resolution quantification of neovascularization reduction in preclinical atherosclerosis models .

Q. How can cytokine modulation studies standardize measurements of this compound’s immunomodulatory effects?

  • Methodological Answer : Use LPS-stimulated CD4+ T cells to quantify dose-dependent suppression of CXCR4/CCR5 expression (flow cytometry) and ELISA for IL-8/TNF-α levels in alveolar macrophages. Statistical validation via Wilcoxon tests for matched samples ensures robustness .

Advanced Research Questions

Q. How can contradictory data on this compound’s efficacy in cancer cachexia versus myeloma be reconciled?

  • Methodological Answer : Heterogeneity in trial populations (e.g., frailty in cachexia vs. younger myeloma cohorts) and outcome definitions (weight stabilization vs. paraprotein reduction) must be addressed. Meta-analyses should stratify by disease stage and treatment history, while mechanistic studies (e.g., TNF-α pathway analysis) clarify context-dependent effects .

Q. What pharmacogenomic strategies identify patients at risk of this compound-associated venous thromboembolism (VTE)?

  • Methodological Answer : Genome-wide SNP analysis (e.g., BOAC panel) prioritizes variants in MTHFR, Ku80, and Cyp3A5. Case-control studies nested within RCTs (e.g., MRC IX trial) match VTE cases to controls for allele frequency comparisons. Pathway-based analysis distinguishes tumor lysis-driven VTE (this compound) from inflammation-mediated events .

Q. Which molecular modeling approaches best predict this compound’s binding to cereblon (CRBN) for teratogenicity studies?

  • Methodological Answer : AutoDock Vina simulations using CRBN crystallographic data (PDBID: 4CI1) validate binding modes via RMSD metrics (<1.5 Å). Multi-pose docking accounts for conformational flexibility, while quantum chemistry calculations assess chiral inversion dynamics in metabolites .

Q. How does minimal residual disease (MRD) status inform this compound maintenance therapy in myeloma?

  • Methodological Answer : Multiparameter flow cytometry (MFC) detects MRD at 10⁻⁴ sensitivity post-ASCT. Stratify patients by cytogenetic risk (e.g., t(4;14)) and correlate MRD negativity with prolonged progression-free survival (PFS). Maintenance this compound’s efficacy is quantified by MRD conversion rates (28% in MRD-positive patients) .

Q. What experimental frameworks address this compound’s chiral inversion in pharmacokinetic studies?

  • Methodological Answer : Chiroptical spectroscopy (e.g., circular dichroism) tracks enantiomer conversion in plasma. Combine with LC-MS/MS to quantify (R)- and (S)-thalidomide metabolites. Quantum mechanical modeling (DFT) predicts activation barriers for inversion pathways .

Comparison with Similar Compounds

Structural and Functional Analogues

Lenalidomide and Pomalidomide

  • Structural Modifications: Lenalidomide features an amino group at the 4th position of the phthalimide ring, while pomalidomide adds a methoxy group .
  • Mechanism: Both bind CRBN but exhibit enhanced specificity for degradation of Ikaros (IKZF1) and Aiolos (IKZF3), critical in multiple myeloma therapy.
  • Efficacy : Lenalidomide shows a 60% response rate in relapsed myeloma, compared to thalidomide’s 32% .
  • Safety : Lower neurotoxicity but higher risk of myelosuppression .

CC-885 and CC-90009

  • Structural Modifications : CC-885 includes a urea and chloromethyl-phenyl group; CC-90009 further optimizes this scaffold .
  • Mechanism : Degrade GSPT1, a translation termination factor, showing potent anti-leukemic activity (IC₅₀ < 10 nM in AML cell lines) .
  • Advantage: No anti-angiogenic effects, avoiding this compound-associated thrombosis .

Apremilast

  • Structural Modifications: Phthalimide replaced with a phthalazinone core .
  • Mechanism : Targets phosphodiesterase-4 (PDE4) instead of CRBN, reducing TNF-α and IL-23 without teratogenic CRBN interactions .

Experimental Analogues

Quinazolinone-Based Derivatives (e.g., Avadomide)

  • Structure: Incorporates quinazolinone instead of phthalimide .
  • Efficacy : Avadomide degrades IKZF1/3 and CK1α, showing 50% progression-free survival in lymphoma trials .
  • Safety : Reduced sedation compared to this compound .

Compound 5C (Anticonvulsant Analogue)

  • Structure : Azide-modified this compound derivative .
  • Efficacy : 1 mg/kg dose achieved 90% seizure reduction in lithium-pilocarpine models, outperforming this compound (100 mg/kg required) .

Compound 7a (Anticancer Agent)

  • Structure : Thiourea-anilide hybrid .
  • Efficacy : IC₅₀ of 10.32 µg/mL against MCF-7 cells, superior to this compound (11.26 µg/mL) .

Data Table: Key this compound Analogues

Compound Structural Modification Target/Neosubstrate Therapeutic Use Efficacy (IC₅₀/Response Rate) Safety Profile
This compound Phthalimide + glutarimide CRBN/SALL4, GSPT1 Myeloma, ENL 32% (myeloma) Teratogenic, neuropathy
Lenalidomide Amino-phthalimide CRBN/IKZF1, IKZF3 Multiple myeloma 60% (myeloma) Myelosuppression
CC-885 Urea + chloromethyl-phenyl CRBN/GSPT1 AML <10 nM (AML) Limited teratogenicity
Apremilast Phthalazinone core PDE4 Psoriasis 75% PASI-75 No teratogenicity
Avadomide Quinazolinone CRBN/IKZF1, CK1α Lymphoma 50% PFS Lower sedation
Compound 5C Azide substitution Unclear Epilepsy 90% seizure reduction No sedation at 1 mg/kg

Research Findings and Clinical Implications

  • Teratogenicity Avoidance : Analogues like lenalidomide and apremilast bypass SALL4 degradation, mitigating limb defects .
  • Enhanced Specificity: CC-885’s GSPT1 targeting offers leukemia-selective cytotoxicity, sparing normal cells .
  • Diverse Mechanisms : Apremilast’s PDE4 inhibition provides CRBN-independent anti-inflammatory effects, expanding therapeutic applications .

Properties

IUPAC Name

2-(2,6-dioxopiperidin-3-yl)isoindole-1,3-dione
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InChI

InChI=1S/C13H10N2O4/c16-10-6-5-9(11(17)14-10)15-12(18)7-3-1-2-4-8(7)13(15)19/h1-4,9H,5-6H2,(H,14,16,17)
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InChI Key

UEJJHQNACJXSKW-UHFFFAOYSA-N
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Canonical SMILES

C1CC(=O)NC(=O)C1N2C(=O)C3=CC=CC=C3C2=O
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Molecular Formula

C13H10N2O4
Record name THALIDOMIDE
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DSSTOX Substance ID

DTXSID9022524
Record name Thalidomide
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Molecular Weight

258.23 g/mol
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Physical Description

Thalidomide appears as needles or white powder. (NTP, 1992), Solid
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Solubility

less than 1 mg/mL at 72 °F (NTP, 1992), In water, approximately 2X10-4 mol/L; 45-60 mg/L at 25 °C, Sparingly soluble in methanol, ethanol, acetone, ethyl acetate, butyl acetate, glacial acetic acid. Very soluble in DMF. Practically insoluble in ether, chloroform, benzene., Very soluble in dioxane, pyridine, 2.55e+00 g/L
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Color/Form

Needles

CAS No.

50-35-1, 841-67-8, 2614-06-4
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Melting Point

516 to 520 °F (NTP, 1992), 270 °C
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Description CAMEO Chemicals is a chemical database designed for people who are involved in hazardous material incident response and planning. CAMEO Chemicals contains a library with thousands of datasheets containing response-related information and recommendations for hazardous materials that are commonly transported, used, or stored in the United States. CAMEO Chemicals was developed by the National Oceanic and Atmospheric Administration's Office of Response and Restoration in partnership with the Environmental Protection Agency's Office of Emergency Management.
Explanation CAMEO Chemicals and all other CAMEO products are available at no charge to those organizations and individuals (recipients) responsible for the safe handling of chemicals. However, some of the chemical data itself is subject to the copyright restrictions of the companies or organizations that provided the data.
Record name Thalidomide
Source DrugBank
URL https://www.drugbank.ca/drugs/DB01041
Description The DrugBank database is a unique bioinformatics and cheminformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information.
Explanation Creative Common's Attribution-NonCommercial 4.0 International License (http://creativecommons.org/licenses/by-nc/4.0/legalcode)
Record name THALIDOMIDE
Source Hazardous Substances Data Bank (HSDB)
URL https://pubchem.ncbi.nlm.nih.gov/source/hsdb/3586
Description The Hazardous Substances Data Bank (HSDB) is a toxicology database that focuses on the toxicology of potentially hazardous chemicals. It provides information on human exposure, industrial hygiene, emergency handling procedures, environmental fate, regulatory requirements, nanomaterials, and related areas. The information in HSDB has been assessed by a Scientific Review Panel.
Record name Thalidomide
Source Human Metabolome Database (HMDB)
URL http://www.hmdb.ca/metabolites/HMDB0015175
Description The Human Metabolome Database (HMDB) is a freely available electronic database containing detailed information about small molecule metabolites found in the human body.
Explanation HMDB is offered to the public as a freely available resource. Use and re-distribution of the data, in whole or in part, for commercial purposes requires explicit permission of the authors and explicit acknowledgment of the source material (HMDB) and the original publication (see the HMDB citing page). We ask that users who download significant portions of the database cite the HMDB paper in any resulting publications.

Synthesis routes and methods

Procedure details

A stirred mixture of N-phthaloyl-L-glutamine (48.0 g, 174 mmoL), carbonyldiimidazole (30.43 g, 188 mmoL), and 4-dimethylaminopyridine (0.105 g, 0.861 mmoL) in anhydrous tetrahydrofuran (300 mL) is heated to reflux for 16 hours. The reaction slurry is filtered and the solid washed with methylene chloride (200 mL). The solid is air-dried and then dried in vacuo (60° C., <1 mm) to afford 40.40 g (90%) of thalidomide as a white powder. 1HNMR (DMSO-d6) δ 11.16 (s, 1 H, NH), 8.05-7.80 (br s, 4 H, Ar), 5.18 (dd, 1 H, J=12, 5 Hz, CHCO), 3.05-2.85 (m, 1 H, CH2CO), 2,70-2.45 (m, 2 H, CH2CH 2), 2.15-2.00 (M, 1 H, CH2). 13C NMR (DMSO-d6) δ 172.8, 169.8, 167.1, 134.9, 131.2, 123.4, 49.0, 30.9, 22.0.
Quantity
48 g
Type
reactant
Reaction Step One
Quantity
30.43 g
Type
reactant
Reaction Step One
Quantity
0.105 g
Type
catalyst
Reaction Step One
Quantity
300 mL
Type
solvent
Reaction Step One
Yield
90%

Retrosynthesis Analysis

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Feasible Synthetic Routes

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