
Vancomycin
Description
Vancomycin is a tricyclic glycopeptide antibiotic first isolated in 1953 from Amycolatopsis orientalis. Its molecular weight is 1485 Da, making it significantly larger than β-lactam antibiotics but comparable to other glycopeptides like teicoplanin and lipoglycopeptides such as telavancin . Structurally, it consists of a seven-membered peptide backbone forming a rigid tricyclic scaffold, with attached disaccharide moieties (vancosamine and glucose) . This compound inhibits bacterial cell wall synthesis by binding to the D-Ala-D-Ala terminus of peptidoglycan precursors, preventing cross-linking in Gram-positive bacteria . It remains a first-line agent against methicillin-resistant Staphylococcus aureus (MRSA), coagulase-negative staphylococci, and enterococci (excluding this compound-resistant strains) .
Properties
Key on ui mechanism of action |
Vancomycin is bactericidal and appears to bind to the bacterial cell wall causing blockage of glycopeptide polymerization. This effect, which occurs at a site different from that affected by the penicillins, produces immediate inhibition of cell wall synthesis and secondary damage to the cytoplasmic membrane. Magnesium, manganese, calcium, and ferrous ions reduce the degree of adsorption of vancomycin to the cell wall, but the in vivo importance of this interaction is unknown. The bactericidal action of vancomycin results primarily from inhibition of cell-wall biosynthesis. In addition, vancomycin alters bacterial-cell-membrane permeability and RNA synthesis. |
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CAS No. |
1404-90-6 |
Molecular Formula |
C66H75Cl2N9O24 |
Molecular Weight |
1449.2 g/mol |
IUPAC Name |
48-[3-[(4S)-4-amino-5-hydroxy-4,6-dimethyloxan-2-yl]oxy-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-22-(2-amino-2-oxoethyl)-5,15-dichloro-2,18,32,35,37-pentahydroxy-19-[[4-methyl-2-(methylamino)pentanoyl]amino]-20,23,26,42,44-pentaoxo-7,13-dioxa-21,24,27,41,43-pentazaoctacyclo[26.14.2.23,6.214,17.18,12.129,33.010,25.034,39]pentaconta-3,5,8(48),9,11,14,16,29(45),30,32,34(39),35,37,46,49-pentadecaene-40-carboxylic acid |
InChI |
InChI=1S/C66H75Cl2N9O24/c1-23(2)12-34(71-5)58(88)76-49-51(83)26-7-10-38(32(67)14-26)97-40-16-28-17-41(55(40)101-65-56(54(86)53(85)42(22-78)99-65)100-44-21-66(4,70)57(87)24(3)96-44)98-39-11-8-27(15-33(39)68)52(84)50-63(93)75-48(64(94)95)31-18-29(79)19-37(81)45(31)30-13-25(6-9-36(30)80)46(60(90)77-50)74-61(91)47(28)73-59(89)35(20-43(69)82)72-62(49)92/h6-11,13-19,23-24,34-35,42,44,46-54,56-57,65,71,78-81,83-87H,12,20-22,70H2,1-5H3,(H2,69,82)(H,72,92)(H,73,89)(H,74,91)(H,75,93)(H,76,88)(H,77,90)(H,94,95)/t24?,34?,35?,42?,44?,46?,47?,48?,49?,50?,51?,52?,53?,54?,56?,57?,65?,66-/m0/s1 |
InChI Key |
MYPYJXKWCTUITO-BSRCFTEOSA-N |
SMILES |
CC1C(C(CC(O1)OC2C(C(C(OC2OC3=C4C=C5C=C3OC6=C(C=C(C=C6)C(C(C(=O)NC(C(=O)NC5C(=O)NC7C8=CC(=C(C=C8)O)C9=C(C=C(C=C9O)O)C(NC(=O)C(C(C1=CC(=C(O4)C=C1)Cl)O)NC7=O)C(=O)O)CC(=O)N)NC(=O)C(CC(C)C)NC)O)Cl)CO)O)O)(C)N)O |
Isomeric SMILES |
CC1C([C@@](CC(O1)OC2C(C(C(OC2OC3=C4C=C5C=C3OC6=C(C=C(C=C6)C(C(C(=O)NC(C(=O)NC5C(=O)NC7C8=CC(=C(C=C8)O)C9=C(C=C(C=C9O)O)C(NC(=O)C(C(C1=CC(=C(O4)C=C1)Cl)O)NC7=O)C(=O)O)CC(=O)N)NC(=O)C(CC(C)C)NC)O)Cl)CO)O)O)(C)N)O |
Canonical SMILES |
CC1C(C(CC(O1)OC2C(C(C(OC2OC3=C4C=C5C=C3OC6=C(C=C(C=C6)C(C(C(=O)NC(C(=O)NC5C(=O)NC7C8=CC(=C(C=C8)O)C9=C(C=C(C=C9O)O)C(NC(=O)C(C(C1=CC(=C(O4)C=C1)Cl)O)NC7=O)C(=O)O)CC(=O)N)NC(=O)C(CC(C)C)NC)O)Cl)CO)O)O)(C)N)O |
Appearance |
White to off-white solid powder |
Key on ui application |
Vancomycin is an antibiotic used to treat a number of bacterial infections. It is a member of the glycopeptide antibiotic class and is effective mostly against Gram-positive bacteria. |
boiling_point |
N/A |
melting_point |
N/A |
Other CAS No. |
1404-90-6 |
physical_description |
Tan to brown solid; [HSDB] |
Pictograms |
Health Hazard |
Purity |
>98% (or refer to the Certificate of Analysis) |
Related CAS |
1404-93-9 (hydrochloride) 64685-75-2 (sulfate) |
shelf_life |
When reconstituted with sterile water for injection, vancomycin hydrochloride injection is stable for 2 weeks at room temperature; the manufacturers state that reconstituted injections may be stored for 96 hours at 2 - 8 °C without substantial loss of potency. When reconstituted as directed in 0.9% sodium chloride injection or 5% dextrose injection, solutions prepared from ADD-Vantage vials of the drug are stable for 24 hours at room temperature. Vancomycin solutions containing 5 mg/mL in 0.9% sodium chloride injection or 5% dextrose injection are reportedly stable for at least 17 days when stored at 24 °C in glass or PVC containers and for at least 63 days when stored at 5 °C or -10 °C in glass containers. Following reconstitution with sterile water for injection as directed, vancomycin solutions that have been further diluted to a concentration of 5 mg/mL in 5 - 30% dextrose injection are stable when stored in plastic syringes for 24 hours at 4 eg C and then subsequently for 2 hours at room temperature. Solutions are stable for two weeks at room temp or longer if refrigerated. /Hydrochloride/ |
solubility |
White solid; solubility in water: greater than 100 mg/mL; moderately soluble in methanol; insoluble in higher alcohols, acetone, ether; UV max absorption (water): 282 nm (e = 40, 1%, 1 cm) /Vancomycin hydrochloride/ |
source |
Synthetic |
Synonyms |
AB-Vancomycin Diatracin Hydrochloride, Vancomycin Sulfate, Vancomycin Vanco Azupharma VANCO-cell Vanco-saar Vancocin Vancocin HCl Vancocine Vancomicina Abbott Vancomicina Chiesi Vancomicina Combino Phar Vancomicina Norman Vancomycin Vancomycin Hexal Vancomycin Hydrochloride Vancomycin Lilly Vancomycin Phosphate (1:2) Vancomycin Phosphate (1:2), Decahydrate Vancomycin Sulfate Vancomycin-ratiopharm Vancomycine Dakota |
Origin of Product |
United States |
Preparation Methods
Strain Selection and Culture Conditions
Vancomycin is biosynthesized by Amycolatopsis orientalis and related actinomycetes. A patented fermentation process utilizes a high-yield bacterial strain cultured in a two-phase medium system. The seed culture medium contains yeast extract (3–6 g/L), barley malt extract (3–5 g/L), peptone (10–15 g/L), and glucose (15–20 g/L) at pH 6.8, incubated at 28–30°C for 24–48 hours.
Table 1: Fermentation Medium Composition
Component | Concentration Range | Function |
---|---|---|
Dextrin | 100–150 g/L | Carbon source |
Potato protein concentrate | 15–25 g/L | Nitrogen source |
Soybean meal | 15–25 g/L | Amino acid supply |
Dipotassium phosphate | 0.1–0.5 g/L | pH buffering |
NaCl | 1.2–1.6 g/L | Osmotic regulation |
The production phase operates at 28–30°C for 90–130 hours with agitation (150–220 rpm), achieving this compound titers up to 5.8 g/L in optimized batches.
Metabolic Engineering Advances
Recent genetic modifications have targeted the nonribosomal peptide synthetase (NRPS) system responsible for assembling this compound’s heptapeptide backbone. Overexpression of the vanK and vanH genes enhances precursor supply, while CRISPR-mediated knockout of competing pathways reduces byproduct formation.
Total Chemical Synthesis
Retrosynthetic Strategy
Boger et al.’s 17-step synthesis of this compound aglycon (Figure 1) demonstrates key innovations:
-
Atroposelective macrocyclization : Suzuki-Miyaura coupling establishes the AB biaryl axis with >20:1 diastereomeric ratio (dr) using tailored phosphine ligands.
-
Kinetic control : Sequential ring closures (AB → CD → DE) prevent epimerization, achieving 0.2% overall yield without atropisomer recycling.
Table 2: Critical Synthetic Steps
Step | Reaction Type | Conditions | Selectivity |
---|---|---|---|
3 | AB macrocyclization | Pd(OAc)₂, SPhos ligand, 60°C | >20:1 dr |
8 | CD ring closure | HATU, DIPEA, DMF, 0°C | 30:1 dr |
12 | DE biaryl coupling | Ni(cod)₂, DTBM-Segphos | 15:1 dr |
Amino Acid Subunit Preparation
Unnatural residues like β-hydroxy-m-chlorotyrosine require multistep syntheses:
-
Chlorination : Electrophilic aromatic substitution on tyrosine derivatives (81% yield).
-
Hydroxylation : Sharpless asymmetric dihydroxylation (92% ee).
Downstream Purification Techniques
Ion Exchange Chromatography
Industrial-scale purification employs a three-step protocol:
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Cation exchange : Crude broth (pH 2.5) binds to Amberlite IR-120, eluted with 0.1 N NH₄OH (pH 10.5).
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Anion exchange : DCA11 resin removes acidic impurities at pH 4.0.
-
Hydrophobic interaction : Amberchrom CG-161M resin with 25% methanol eluent.
Table 3: Crystallization Parameters
Parameter | Optimal Range | Impact on Purity |
---|---|---|
HCl concentration | 2–5% (v/v) | Precipitates >95% API |
Acetone:Solution ratio | 5:1 | Reduces solvent residues |
Cooling rate | 0.5–5°C/min | Controls crystal size |
Post-crystallization, vacuum drying at 40°C yields this compound hydrochloride with ≤0.3% related substances by HPLC.
Nanoparticle Formulation Strategies
Clay-Based Drug Carriers
Montmorillonite (MMT) nanocomposites enhance this compound stability:
Table 4: Nanoparticle Characterization
Property | Van/MMT NPs | Van/MMT-SA Gel |
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Mean particle size | 220 nm | 450 nm |
Zeta potential | -32 mV | -18 mV |
MIC against MRSA | 1.2 µg/mL | 0.8 µg/mL |
Industrial Scale-Up Challenges
Chemical Reactions Analysis
Biosynthetic Cross-Linking Reactions
Vancomycin’s bioactive structure arises from enzymatic oxidative cross-linking of a linear heptapeptide precursor. Three cytochrome P450 enzymes (OxyB, OxyA, OxyC) catalyze sequential aryl-ether and carbon-carbon bond formations:
- OxyB : Cross-links residues 4 (Tyr) and 6 (Hpg) via an aryl-ether bond.
- OxyA : Links residues 2 (Hpg) and 4 (Tyr) through a second aryl-ether bond.
- OxyC : Installs a strained carbon-carbon bond between residues 5 (Hpg) and 7 (Dpg), completing the rigid cup-shaped scaffold .
Mechanistic Hydrogen Bonding Interactions
This compound binds the D-Ala-D-Ala terminus of peptidoglycan precursors via five hydrogen bonds:
- Backbone carbonyl of residue 4 (Tyr) ↔ NH of D-Ala.
- Residue 5 (Hpg) NH ↔ D-Ala carbonyl.
- Residue 2 (Hpg) NH ↔ D-Ala carbonyl.
- Residue 6 (Hpg) NH ↔ D-Ala NH.
- Residue 7 (Dpg) NH ↔ D-Ala NH .
This interaction disrupts transglycosylation, weakening bacterial cell walls . Resistance arises when D-Ala-D-Lac replaces D-Ala-D-Ala, eliminating one hydrogen bond and introducing electrostatic repulsion .
Hydrophobic Substituents
Adding hydrophobic groups (e.g., quaternary ammonium moieties) enhances activity against this compound-resistant enterococci (VRE):
Derivative | Modification Site | Effect on MIC (μg/mL) |
---|---|---|
QVA-1 | N-terminus | 0.5 (vs. 64 for this compound) |
QVA-20 | C-terminus | 1.0 (vs. 128) |
Dual-Binding Analogs
Total synthesis enables modifications to the heptapeptide core for dual binding to D-Ala-D-Ala and D-Ala-D-Lac:
Degradation and Metabolic Pathways
This compound undergoes enzymatic and environmental degradation:
- In vitro metabolism : Rat liver microsomes catalyze demethylation and hydroxylation .
- Aquatic degradation : Hydrolysis under alkaline conditions cleaves glycosidic bonds, yielding aglycone fragments .
Table 2: Major Degradation Products
Condition | Primary Product | Bioactivity Loss |
---|---|---|
Alkaline hydrolysis | Aglycone + vancosamine | Complete |
Collision energy | CO loss from polypeptide | Partial |
Synthetic Conjugation Reactions
This compound’s N-methylleucine residue enables site-specific conjugation:
- Selenocysteine-mediated linking : Attaches antimicrobial peptides (e.g., CRAMP) via selenocysteine handles, enhancing potency against MRSA (MIC: 0.25 μg/mL vs. 2 μg/mL for this compound) .
Structural Analysis via NMR and MS
Nuclear magnetic resonance (NMR) and mass spectrometry (MS) elucidate this compound’s structure:
- 1H-13C HMBC : Confirmed α-L-vancosaminyl-(1→2)-O-β-D-glucosyl linkage .
- CD spectroscopy : Verified 3D structure consistency with reference standards .
Key Findings and Implications
- Biosynthesis : Enzymatic cross-linking by OxyB/OxyA/OxyC is indispensable for bioactivity .
- Resistance Mitigation : Hydrophobic and dual-binding analogs show promise against VRE .
- Degradation : Environmental stability limits ecological impact but necessitates controlled disposal .
This synthesis underscores this compound’s chemical versatility and ongoing efforts to combat resistance through innovative synthetic strategies.
Scientific Research Applications
Clinical Applications
FDA-Approved Indications:
Vancomycin is indicated for various infections, including:
- Clostridioides difficile-associated diarrhea
- Staphylococcal infections (including septicemia, skin and soft tissue infections)
- Endocarditis caused by enterococci and staphylococci
- Bone infections and lower respiratory tract infections
Off-Label Uses:
this compound is also utilized in several off-label scenarios:
- Catheter-related infections
- Bacterial meningitis
- Surgical prophylaxis
- Necrotizing skin and soft tissue infections
Research Findings
Recent studies have highlighted the efficacy of this compound in various clinical settings:
-
Topical Application in Surgical Site Infections:
A systematic review indicated that the local application of this compound powder significantly reduces the incidence of surgical site infections (SSIs) following joint arthroplasty. However, it was associated with an increased risk of complications such as delayed healing . -
Pediatric Applications:
Research has demonstrated this compound's immunomodulatory effects in pediatric patients with inflammatory bowel disease, suggesting its potential role beyond mere antibacterial action . -
Intrawound Use in Spine Surgery:
A meta-analysis involving 18 studies showed that intrawound application of this compound powder significantly lowers the odds of developing deep infections during spine surgeries compared to standard practices . The odds ratio for deep infections was found to be 0.23, indicating a substantial protective effect.
Data Table: Summary of this compound Applications
Application Type | Description | Evidence Level |
---|---|---|
FDA-Approved Uses | Treats MRSA, endocarditis, bone infections | High |
Off-Label Uses | Includes meningitis, surgical prophylaxis | Moderate |
Topical Application | Reduces SSIs in joint surgeries | Systematic Review |
Pediatric Immunomodulation | Affects TNF-alpha pathways in inflammatory conditions | Case Study |
Intrawound Use in Spine Surgery | Lowers deep infection rates significantly | Meta-analysis |
Mechanism of Action
Vancomycin works by inhibiting cell wall synthesis in bacteria. It binds to the D-alanyl-D-alanine terminus of cell wall precursor units, preventing their incorporation into the cell wall and thus weakening the bacterial cell wall, leading to cell lysis and death . This mechanism makes it highly effective against Gram-positive bacteria .
Comparison with Similar Compounds
Comparison with Other Glycopeptides and Lipoglycopeptides
Teicoplanin and Dalbavancin
- Teicoplanin : Shares vancomycin’s mechanism but has a longer half-life (70–100 hours vs. This compound’s 4–6 hours) due to lipophilic side chains, enabling once-daily dosing. However, it is less effective against Staphylococcus haemolyticus and some enterococci .
- Dalbavancin : A semi-synthetic lipoglycopeptide with a half-life of 8–12 days, allowing weekly dosing. It demonstrates lower MIC values against MRSA (0.06 µg/mL) compared to this compound (1–2 µg/mL) .
Telavancin and Oritavancin
- Telavancin : A semi-synthetic derivative with dual mechanisms: cell wall inhibition and membrane depolarization. It shows 2–4-fold greater potency than this compound against MRSA (MIC₉₀: 0.5 µg/mL vs. 1 µg/mL) but carries a higher risk of nephrotoxicity .
- Oritavancin : Exhibits prolonged post-antibiotic effects and activity against this compound-resistant enterococci (VRE) due to its ability to dimerize and penetrate biofilms. Its MIC for VRE is 0.25–1 µg/mL, compared to this compound’s >16 µg/mL .
Comparison with Cyclic Lipopeptides: Daptomycin
Unlike this compound, it is bactericidal and effective against this compound-resistant Enterococcus faecium (VREfm). Key differences include:
- Spectrum : Daptomycin covers VRE and Streptococcus bovis, whereas this compound is inactive against VRE.
- Pharmacodynamics : Daptomycin’s AUC/MIC ratio correlates with efficacy, while this compound relies on time above MIC .
- Clinical Outcomes: In trials, daptomycin demonstrated non-inferiority to this compound for MRSA bacteremia but is less effective in pulmonary infections due to surfactant interference .
Comparison with this compound Derivatives
Recent derivatives aim to overcome resistance and enhance efficacy (Table 1):
Clinical Use Comparisons
This compound vs. Gentamicin in Graft Presoaking
For anterior cruciate ligament reconstruction (ACLR), gentamicin and this compound show equivalent infection prevention (0.5% vs. 0.6% incidence). Gentamicin is preferred due to lower cost ($10 vs. $150 per dose) and similar chondrotoxicity profiles .
Nephrotoxicity in Combination Therapy
No significant difference in nephrotoxicity risk was observed between this compound monotherapy and this compound/piperacillin-tazobactam combinations (RR = 1.1, p = 0.073) .
Biological Activity
Vancomycin is a glycopeptide antibiotic that plays a crucial role in the treatment of serious infections caused by Gram-positive bacteria, particularly those resistant to other antibiotics. This article delves into its biological activity, mechanisms of action, and recent research findings, including case studies and data tables.
This compound primarily exerts its antibacterial effect by inhibiting cell wall synthesis in bacteria. It binds to the D-alanyl-D-alanine terminus of cell wall precursor units, preventing their incorporation into the growing cell wall. This action leads to cell lysis and death, particularly in rapidly dividing bacteria. Additionally, this compound has been shown to alter the permeability of bacterial cell membranes and inhibit RNA synthesis, further contributing to its antimicrobial effects .
Antibacterial Spectrum
This compound is effective against a broad range of Gram-positive organisms, including:
- Staphylococcus aureus (including MRSA)
- Streptococcus pneumoniae
- Enterococcus faecium (including this compound-resistant strains)
- Clostridium difficile
Despite its effectiveness, this compound has limited activity against Gram-negative bacteria due to its large molecular size and inability to penetrate the outer membrane .
Recent Research Findings
Recent studies have focused on enhancing the efficacy of this compound through various modifications and combinations:
- Novel Derivatives : Research indicates that introducing quaternary ammonium cations into this compound can significantly improve its antibacterial activity. For instance, a derivative known as QAV-a1 showed higher survival rates in infected mice compared to standard this compound at higher doses .
- Conjugation with Cell-Penetrating Peptides (CPPs) : Studies demonstrated that conjugating this compound with CPPs like Tat (47–57) enhances its antimicrobial properties. The cytotoxicity of these conjugates was evaluated, showing varied effects on cell viability at different concentrations .
- Biofilm Activity : this compound's efficacy against biofilms is notably lower than its activity against planktonic cells. Modifications such as dipicolylamine functionalization have been explored to enhance its effectiveness against biofilm-associated infections .
Case Studies
Several case studies illustrate the clinical application of this compound:
- Case Study 1 : A patient with MRSA bacteremia was treated with this compound combined with an aminoglycoside, resulting in a successful outcome. The combination therapy demonstrated enhanced efficacy compared to monotherapy, highlighting the importance of synergistic effects in treatment .
- Case Study 2 : In a pediatric population, the emergence of resistance to this compound was monitored. Despite concerns about resistance patterns, no significant increase was observed over three decades, indicating sustained effectiveness against common pathogens .
Table 1: Efficacy of this compound Against Various Bacterial Strains
Bacterial Strain | Minimum Inhibitory Concentration (MIC) | Resistance Status |
---|---|---|
Staphylococcus aureus (MRSA) | 1 µg/mL | Sensitive |
Enterococcus faecium | 8 µg/mL | VanA phenotype |
Streptococcus pneumoniae | 0.5 µg/mL | Sensitive |
Clostridium difficile | 4 µg/mL | Sensitive |
Table 2: Comparative Survival Rates in In Vivo Studies
Treatment | Dosage (mg/kg) | Survival Rate (%) |
---|---|---|
This compound | 40 | 33.3 |
QAV-a1 | 40 | 100 |
Q & A
Q. Can machine learning predict this compound resistance emergence in gut microbiota?
- Methodological Answer : Train algorithms on metagenomic datasets from patients receiving oral this compound. Feature selection should include antibiotic exposure duration, baseline microbiota diversity, and Enterococcus colonization dynamics. Validate models in prospective cohorts .
Methodological Frameworks for Data Analysis
Q. How to resolve heterogeneity in this compound meta-analyses?
Q. What statistical tools are optimal for analyzing this compound’s organ toxicity risks?
- Answer : Employ competing-risk regression models to account for simultaneous outcomes (e.g., sepsis, chemotherapy toxicity). Use mediation analysis to distinguish direct drug effects from confounding pathways .
Data Sharing and Reproducibility
Q. How can researchers access clinical trial data for secondary this compound analyses?
- Answer : Submit proposals to repositories like the Antibacterial Resistance Leadership Group (ARLG). Include methodological rigor assessments and data-sharing agreements. Access protocols, statistical plans, and datasets for independent validation .
Retrosynthesis Analysis
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Strategy Settings
Precursor scoring | Relevance Heuristic |
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Min. plausibility | 0.01 |
Model | Template_relevance |
Template Set | Pistachio/Bkms_metabolic/Pistachio_ringbreaker/Reaxys/Reaxys_biocatalysis |
Top-N result to add to graph | 6 |
Feasible Synthetic Routes
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Please be aware that all articles and product information presented on BenchChem are intended solely for informational purposes. The products available for purchase on BenchChem are specifically designed for in-vitro studies, which are conducted outside of living organisms. In-vitro studies, derived from the Latin term "in glass," involve experiments performed in controlled laboratory settings using cells or tissues. It is important to note that these products are not categorized as medicines or drugs, and they have not received approval from the FDA for the prevention, treatment, or cure of any medical condition, ailment, or disease. We must emphasize that any form of bodily introduction of these products into humans or animals is strictly prohibited by law. It is essential to adhere to these guidelines to ensure compliance with legal and ethical standards in research and experimentation.