molecular formula C25H25F3N4O6 B1670213 Delamanid CAS No. 681492-22-8

Delamanid

货号: B1670213
CAS 编号: 681492-22-8
分子量: 534.5 g/mol
InChI 键: XDAOLTSRNUSPPH-XMMPIXPASA-N
注意: 仅供研究使用。不适用于人类或兽医用途。
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描述

Delamanid (OPC-67683) is a nitro-dihydro-imidazooxazole derivative approved in 2014 by the European Medicines Agency (EMA) for treating multidrug-resistant tuberculosis (MDR-TB) . It inhibits mycolic acid biosynthesis, a critical component of the Mycobacterium tuberculosis (Mtb) cell wall, thereby disrupting bacterial structural integrity and viability . This compound demonstrates potent activity against both drug-susceptible and drug-resistant Mtb strains, including intracellular bacilli .

准备方法

合成路线和反应条件: 德拉曼尼德是通过多步合成工艺制备的,该工艺涉及形成咪唑并恶唑核心,然后引入各种官能团。主要步骤包括:

  • 形成咪唑并恶唑环。
  • 引入硝基。
  • 连接三氟甲氧基苯氧基和哌啶基苯氧基。

工业生产方法: 德拉曼尼德的工业生产涉及使用优化的反应条件进行大规模合成,以确保高产率和纯度。该过程包括:

化学反应分析

反应类型: 德拉曼尼德会经历各种化学反应,包括:

    还原: 硝基被还原为胺。

    氧化: 咪唑并恶唑环可以在特定条件下进行氧化。

    取代: 咪唑并恶唑环上的官能团可以被其他基团取代。

常用试剂和条件:

    还原: 使用钯碳催化加氢。

    氧化: 使用高锰酸钾等氧化剂。

    取代: 使用适当亲核试剂的亲核取代反应。

主要产物:

科学研究应用

德拉曼尼德具有广泛的科学研究应用,包括:

    化学: 用作研究硝基咪唑衍生物的模型化合物。

    生物学: 研究其对结核分枝杆菌和其他细菌菌株的影响。

    医学: 主要用于治疗多重耐药结核病。 .

    工业: 用于开发新的抗结核药物和制剂.

作用机制

德拉曼尼德通过抑制甲氧基和酮基分枝菌酸的合成发挥作用,而分枝菌酸是分枝杆菌细胞壁的重要组成部分。它是一种前药,需要由分枝杆菌 F420 辅酶系统(包括脱氮黄素依赖性硝基还原酶)激活。 这种活化会导致活性氮物种的产生,从而破坏分枝菌酸的合成,最终杀死细菌 .

类似化合物:

    普雷托曼尼德: 另一种用于治疗结核病的硝基咪唑衍生物。

    异烟肼: 一种一线抗结核药物,抑制分枝菌酸合成。

    利福平: 一种抑制细菌 RNA 合成的抗生素。

比较:

德拉曼尼德独特的作用机制及其对耐药菌株的有效性使其成为抗结核药物库中的宝贵补充。

相似化合物的比较

Delamanid vs. Pretomanid (PA-824)

Mechanistic Similarities :
Both are nitroimidazoles derived from Streptomyces eurocidicus, targeting mycolic acid synthesis and inducing respiratory toxicity via nitric oxide release .

Key Differences :

Parameter This compound Pretomanid
Approval Status EMA (2014), WHO Essential Medicine FDA (2019) for pulmonary MDR-TB
Cross-Resistance 72% cross-resistance in preclinical models Lower clinical cross-resistance (17%)
Clinical Use Prioritized for MDR-TB with QT monitoring Used in shorter, all-oral regimens (e.g., BPaL)

Research Findings :

  • Preclinical studies identified shared resistance mutations (e.g., fbiA, fgd), but clinical isolates show divergent susceptibility profiles .
  • Pretomanid exhibits broader anti-mycobacterial activity, including non-replicating bacilli, while this compound excels in tissue penetration .

This compound vs. Bedaquiline

Mechanistic Contrast :

  • This compound : Inhibits cell wall synthesis.
  • Bedaquiline : Targets ATP synthase, disrupting bacterial energy metabolism .

Clinical Outcomes :

Parameter This compound Bedaquiline
Culture Conversion 48% at 60 days; 77% at 180 days 64% at 60 days; 95% at 180 days
Resistance Acquisition 35% 12%
QTc Prolongation Dose-dependent (10–13% incidence) Driven by metabolite M2

Combination Therapy :

  • Co-administration with bedaquiline achieves sputum culture conversion (SCC) rates of 74–100% at 6 months .
  • Pharmacodynamic models suggest additive effects without competitive interactions .

Cross-Resistance and Pharmacokinetic Challenges

Cross-Resistance :

  • Preclinical models show high cross-resistance between this compound and pretomanid (23/32 isolates) due to shared metabolic activation pathways (fbiA, ddn mutations) .
  • Clinical isolates exhibit lower overlap (2/12 resistant to both), suggesting divergent resistance mechanisms in humans .

Table 1: Clinical Trial Outcomes

Study This compound Bedaquiline Combination
2-Month Sputum Conversion 45.4% (100 mg BID) 54% (placebo-adjusted) N/A
6-Month SCC Rate 77% 95% 74–100%
Adverse Events QT prolongation (10–13%) QTcF prolongation (M2-driven) Synergistic QT effects

Table 2: Pharmacokinetic Comparison

Parameter This compound Pretomanid Bedaquiline
Half-Life 15.1 h (parent); 187.2 h (DM-6705) 16–20 h 5.5 months (terminal)
Tissue Penetration Lung > plasma Limited data High lung concentration

生物活性

Delamanid, a novel compound from the nitro-dihydro-imidazooxazole class, has emerged as a significant agent in the fight against multidrug-resistant tuberculosis (MDR-TB). Its unique mechanism of action, coupled with potent biological activity against various strains of Mycobacterium tuberculosis (MTB), positions it as a valuable addition to existing tuberculosis therapies.

This compound primarily functions by inhibiting the synthesis of mycolic acids, crucial components of the mycobacterial cell wall. This inhibition is mediated through the activation of this compound by the enzyme deazaflavin-dependent nitroreductase (Ddn), which facilitates its conversion into a reactive intermediate that disrupts mycolic acid production .

Key Mechanistic Insights:

  • Pro-drug Activation : this compound is a pro-drug that requires metabolic activation by Ddn, which is specific to mycobacteria and not present in human cells, thereby minimizing potential toxicity .
  • Inhibition of Mycolic Acid Synthesis : The drug targets methoxy-mycolic and keto-mycolic acid synthesis pathways, critical for mycobacterial cell wall integrity .
  • Selective Activity : The selective activation mechanism helps explain this compound's efficacy against mycobacteria while avoiding genotoxic effects in humans .

In Vitro Studies

This compound has demonstrated potent antibacterial activity in vitro against both drug-susceptible and drug-resistant strains of MTB. The minimum inhibitory concentration (MIC) ranges from 0.006 to 0.024 μg/ml, indicating high potency . Notably, studies reveal:

  • No Cross-Resistance : this compound does not exhibit cross-resistance with first-line anti-TB drugs such as rifampicin and isoniazid, making it an effective option for patients who have failed previous treatments .
  • Post-Antibiotic Effect : It shows a significant post-antibiotic effect on intracellular organisms after pulsed therapy, comparable to rifampicin .

Clinical Trials

Clinical investigations have confirmed this compound's efficacy in real-world settings:

  • Early Bactericidal Activity : A study involving smear-positive TB patients showed that this compound significantly reduced colony-forming units (CFUs) over a 14-day treatment period, with higher doses correlating with greater reductions .
  • Randomized Trials : In a placebo-controlled trial on MDR-TB patients, this compound combined with an optimized background regimen resulted in higher sputum culture conversion rates compared to placebo .

Case Studies

A review of clinical outcomes indicated that treatment with this compound for six months led to improved patient outcomes and reduced mortality rates among MDR-TB patients .

Summary of Research Findings

Study TypeFindings
In Vitro StudiesMIC of 0.006-0.024 μg/ml; no cross-resistance with first-line drugs; significant post-antibiotic effect observed.
Clinical TrialsSignificant reduction in CFUs; higher sputum culture conversion rates in treated groups.
Case StudiesImproved outcomes and reduced mortality in patients treated with this compound alongside optimized regimens.

Resistance Mechanisms

Despite its effectiveness, resistance to this compound can occur. Mutations in coenzyme F420 genes have been implicated as mechanisms for resistance in mycobacteria . Understanding these resistance pathways is crucial for developing strategies to mitigate treatment failures.

常见问题

Basic Research Questions

Q. What is the molecular mechanism of Delamanid’s antimycobacterial activity, and how can this inform experimental design?

this compound inhibits mycolic acid synthesis by targeting the F420-dependent deazaflavin nitroreductase (Ddn) system in Mycobacterium tuberculosis (Mtb), disrupting cell wall integrity . To validate this mechanism experimentally:

  • Use in vitro assays with F420-deficient Mtb strains to confirm target specificity.
  • Combine lipidomic profiling (e.g., HPLC) to quantify mycolic acid inhibition .
  • Reference clinical pharmacokinetic data (e.g., protein binding >99%, half-life 30–38 hours) to optimize dosing in animal models .

Q. How should researchers design studies to evaluate this compound’s efficacy in multidrug-resistant TB (MDR-TB) patients?

  • Cohort selection : Prioritize participants with baseline sputum culture positivity and documented MDR/RR-TB resistance, excluding those with concurrent CYP3A4 inducer use (e.g., rifampicin) to avoid pharmacokinetic interference .
  • Outcome metrics : Use two consecutive negative cultures ≥15 days apart as the primary endpoint for culture conversion .
  • Control for confounders : Adjust for variables like prior TB drug exposure, comorbidities, and regimen changes using inverse probability weighting .

Q. What are the key considerations for interpreting this compound’s clinical trial data, particularly conflicting results on culture conversion?

  • Example : In the endTB cohort, adding this compound to 3-drug regimens did not significantly improve 2-month culture conversion (49.6% vs. 55.6% in controls) but reduced mortality with prolonged use .
  • Methodological resolution : Conduct time-to-event analysis to assess delayed conversion and stratify by treatment duration (e.g., ≥6 months vs. shorter courses) .

Advanced Research Questions

Q. How can this compound’s pharmacokinetic variability be addressed in preclinical-to-clinical translation?

  • Challenge : this compound’s absorption increases 3-fold with high-fat meals, complicating dosing consistency .
  • Solutions :

  • Standardize fed/fasted conditions in animal studies and correlate with plasma exposure (AUC/MIC ratios).
  • Use physiologically based pharmacokinetic (PBPK) modeling to predict human outcomes from nonclinical data .

Q. What experimental strategies can elucidate this compound’s resistance mechanisms?

  • Hypothesis : Mutations in F420 biosynthetic genes (e.g., fgd, fbiA) reduce prodrug activation .
  • Methods :

  • Perform whole-genome sequencing of post-treatment Mtb isolates to identify resistance-associated variants.
  • Validate using in vitro susceptibility testing with isogenic mutant strains .

Q. How should researchers evaluate this compound’s synergy with other anti-TB drugs in combination regimens?

  • Approach :

  • Use checkerboard assays or time-kill curves to quantify synergy with bedaquiline, linezolid, or pretomanid .
  • Monitor for QT prolongation when combining with other CYP3A4-metabolized drugs (e.g., clofazimine) via electrocardiogram in phase II trials .

Q. How can contradictory findings on this compound’s efficacy be resolved in meta-analyses?

  • Case : Early studies reported 70–95% culture conversion with this compound, while later trials showed marginal benefits .
  • Resolution :

  • Apply GRADE criteria to assess bias risk, heterogeneity, and publication bias.
  • Perform subgroup analyses by region (e.g., high vs. low TB burden) and resistance profiles .

Q. Methodological Rigor and Reproducibility

Q. What steps ensure reproducibility in this compound-related studies?

  • Data transparency : Publish raw culture conversion timelines and regimen adjustments in supplementary materials .
  • Protocol adherence : Follow WHO guidelines for MDR-TB treatment duration and outcome definitions (e.g., "cured" vs. "completed") .
  • Statistical rigor : Pre-specify endpoints and adjust for immortal time bias in observational studies using Cox models .

Q. How can researchers adapt preclinical models for this compound’s extrapulmonary TB applications?

  • Model selection : Use murine or rabbit models of TB meningitis or osteomyelitis to assess blood-brain barrier penetration .
  • Metrics : Compare this compound concentrations in infected tissues (e.g., lymph nodes) via LC-MS/MS .

Q. Tables for Key Data

Table 1. This compound Pharmacokinetic Parameters

ParameterValueSource
Protein binding>99%
Half-life30–38 hours
Metabolic pathwayCYP3A4-mediated hydrolysis
Food effect (AUC)3-fold increase with high-fat

Table 2. Clinical Outcomes from Key this compound Studies

Study DesignCulture Conversion (2-month)Mortality (≥6 months)Source
endTB Observational49.6% (this compound) vs. 55.6%1.0% (this compound)
Phase IIb Trial45.4% (this compound) vs. 29.6%8.3% (Control)

属性

IUPAC Name

(2R)-2-methyl-6-nitro-2-[[4-[4-[4-(trifluoromethoxy)phenoxy]piperidin-1-yl]phenoxy]methyl]-3H-imidazo[2,1-b][1,3]oxazole
Source PubChem
URL https://pubchem.ncbi.nlm.nih.gov
Description Data deposited in or computed by PubChem

InChI

InChI=1S/C25H25F3N4O6/c1-24(15-31-14-22(32(33)34)29-23(31)38-24)16-35-18-4-2-17(3-5-18)30-12-10-20(11-13-30)36-19-6-8-21(9-7-19)37-25(26,27)28/h2-9,14,20H,10-13,15-16H2,1H3/t24-/m1/s1
Source PubChem
URL https://pubchem.ncbi.nlm.nih.gov
Description Data deposited in or computed by PubChem

InChI Key

XDAOLTSRNUSPPH-XMMPIXPASA-N
Source PubChem
URL https://pubchem.ncbi.nlm.nih.gov
Description Data deposited in or computed by PubChem

Canonical SMILES

CC1(CN2C=C(N=C2O1)[N+](=O)[O-])COC3=CC=C(C=C3)N4CCC(CC4)OC5=CC=C(C=C5)OC(F)(F)F
Source PubChem
URL https://pubchem.ncbi.nlm.nih.gov
Description Data deposited in or computed by PubChem

Isomeric SMILES

C[C@@]1(CN2C=C(N=C2O1)[N+](=O)[O-])COC3=CC=C(C=C3)N4CCC(CC4)OC5=CC=C(C=C5)OC(F)(F)F
Source PubChem
URL https://pubchem.ncbi.nlm.nih.gov
Description Data deposited in or computed by PubChem

Molecular Formula

C25H25F3N4O6
Source PubChem
URL https://pubchem.ncbi.nlm.nih.gov
Description Data deposited in or computed by PubChem

DSSTOX Substance ID

DTXSID60218326
Record name Delamanid
Source EPA DSSTox
URL https://comptox.epa.gov/dashboard/DTXSID60218326
Description DSSTox provides a high quality public chemistry resource for supporting improved predictive toxicology.

Molecular Weight

534.5 g/mol
Source PubChem
URL https://pubchem.ncbi.nlm.nih.gov
Description Data deposited in or computed by PubChem

CAS No.

681492-22-8
Record name Delamanid
Source CAS Common Chemistry
URL https://commonchemistry.cas.org/detail?cas_rn=681492-22-8
Description CAS Common Chemistry is an open community resource for accessing chemical information. Nearly 500,000 chemical substances from CAS REGISTRY cover areas of community interest, including common and frequently regulated chemicals, and those relevant to high school and undergraduate chemistry classes. This chemical information, curated by our expert scientists, is provided in alignment with our mission as a division of the American Chemical Society.
Explanation The data from CAS Common Chemistry is provided under a CC-BY-NC 4.0 license, unless otherwise stated.
Record name Delamanid [USAN:INN:JAN]
Source ChemIDplus
URL https://pubchem.ncbi.nlm.nih.gov/substance/?source=chemidplus&sourceid=0681492228
Description ChemIDplus is a free, web search system that provides access to the structure and nomenclature authority files used for the identification of chemical substances cited in National Library of Medicine (NLM) databases, including the TOXNET system.
Record name Delamanid
Source DrugBank
URL https://www.drugbank.ca/drugs/DB11637
Description The DrugBank database is a unique bioinformatics and cheminformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information.
Explanation Creative Common's Attribution-NonCommercial 4.0 International License (http://creativecommons.org/licenses/by-nc/4.0/legalcode)
Record name Delamanid
Source EPA DSSTox
URL https://comptox.epa.gov/dashboard/DTXSID60218326
Description DSSTox provides a high quality public chemistry resource for supporting improved predictive toxicology.
Record name DELAMANID
Source FDA Global Substance Registration System (GSRS)
URL https://gsrs.ncats.nih.gov/ginas/app/beta/substances/8OOT6M1PC7
Description The FDA Global Substance Registration System (GSRS) enables the efficient and accurate exchange of information on what substances are in regulated products. Instead of relying on names, which vary across regulatory domains, countries, and regions, the GSRS knowledge base makes it possible for substances to be defined by standardized, scientific descriptions.
Explanation Unless otherwise noted, the contents of the FDA website (www.fda.gov), both text and graphics, are not copyrighted. They are in the public domain and may be republished, reprinted and otherwise used freely by anyone without the need to obtain permission from FDA. Credit to the U.S. Food and Drug Administration as the source is appreciated but not required.

Retrosynthesis Analysis

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Strategy Settings

Precursor scoring Relevance Heuristic
Min. plausibility 0.01
Model Template_relevance
Template Set Pistachio/Bkms_metabolic/Pistachio_ringbreaker/Reaxys/Reaxys_biocatalysis
Top-N result to add to graph 6

Feasible Synthetic Routes

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